Results 1 - 20 of 162 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
16023 | 5' | -60.5 | NC_004065.1 | + | 225398 | 0.66 | 0.814801 |
Target: 5'- uGGCgCUGAUGGugCCGCUcccucucgaaggGUCGUgGCg -3' miRNA: 3'- cCUG-GACUGCCugGGCGA------------CGGCGaCG- -5' |
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16023 | 5' | -60.5 | NC_004065.1 | + | 178832 | 0.66 | 0.822874 |
Target: 5'- aGGACCUugaugaGugGGAgccUCCGUguggccuguaccUGCUGCUGUc -3' miRNA: 3'- -CCUGGA------CugCCU---GGGCG------------ACGGCGACG- -5' |
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16023 | 5' | -60.5 | NC_004065.1 | + | 170446 | 0.66 | 0.822874 |
Target: 5'- aGGACgCcGcCGGAggcgccUUCGCUGCCGCcGCa -3' miRNA: 3'- -CCUG-GaCuGCCU------GGGCGACGGCGaCG- -5' |
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16023 | 5' | -60.5 | NC_004065.1 | + | 133343 | 0.66 | 0.806581 |
Target: 5'- -aACCUGGCGGugUUGUucuUGCCGgUGa -3' miRNA: 3'- ccUGGACUGCCugGGCG---ACGGCgACg -5' |
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16023 | 5' | -60.5 | NC_004065.1 | + | 109863 | 0.66 | 0.838557 |
Target: 5'- aGGugCcgGGCGGugCCaccgGCgucGCCGCgGCc -3' miRNA: 3'- -CCugGa-CUGCCugGG----CGa--CGGCGaCG- -5' |
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16023 | 5' | -60.5 | NC_004065.1 | + | 49658 | 0.66 | 0.846154 |
Target: 5'- uGGACCaguuucccgUGGCGGugCCGCcGgaGCagGCg -3' miRNA: 3'- -CCUGG---------ACUGCCugGGCGaCggCGa-CG- -5' |
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16023 | 5' | -60.5 | NC_004065.1 | + | 33659 | 0.66 | 0.806581 |
Target: 5'- cGACCgucCGG-CgCGCggggaggGCCGCUGCg -3' miRNA: 3'- cCUGGacuGCCuGgGCGa------CGGCGACG- -5' |
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16023 | 5' | -60.5 | NC_004065.1 | + | 161352 | 0.66 | 0.814801 |
Target: 5'- -cGCCUGGCacGACUCGUacGCCGaCUGCg -3' miRNA: 3'- ccUGGACUGc-CUGGGCGa-CGGC-GACG- -5' |
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16023 | 5' | -60.5 | NC_004065.1 | + | 68867 | 0.66 | 0.814801 |
Target: 5'- uGACCga--GGACCUGCUGUacCUGCa -3' miRNA: 3'- cCUGGacugCCUGGGCGACGgcGACG- -5' |
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16023 | 5' | -60.5 | NC_004065.1 | + | 61823 | 0.66 | 0.828435 |
Target: 5'- cGGACUcGACGGcgucgucaaacaagGCgUCGC-GCCGCUGUc -3' miRNA: 3'- -CCUGGaCUGCC--------------UG-GGCGaCGGCGACG- -5' |
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16023 | 5' | -60.5 | NC_004065.1 | + | 86260 | 0.66 | 0.846154 |
Target: 5'- gGGACCguUGAUGaaacgguaGAUCUGCUGCCcgaGCUGg -3' miRNA: 3'- -CCUGG--ACUGC--------CUGGGCGACGG---CGACg -5' |
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16023 | 5' | -60.5 | NC_004065.1 | + | 192340 | 0.66 | 0.838557 |
Target: 5'- gGGACgUGACGGGCuCCuCUGUCaCgaggGCg -3' miRNA: 3'- -CCUGgACUGCCUG-GGcGACGGcGa---CG- -5' |
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16023 | 5' | -60.5 | NC_004065.1 | + | 68568 | 0.66 | 0.806581 |
Target: 5'- uGGGCCUGGCGaGCaaCGCgGCgGCgGCg -3' miRNA: 3'- -CCUGGACUGCcUGg-GCGaCGgCGaCG- -5' |
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16023 | 5' | -60.5 | NC_004065.1 | + | 28337 | 0.66 | 0.813168 |
Target: 5'- aGGGCCUGucCGcGuugugccgccgcaGCCuCGCUuucgcgcGCCGCUGCu -3' miRNA: 3'- -CCUGGACu-GC-C-------------UGG-GCGA-------CGGCGACG- -5' |
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16023 | 5' | -60.5 | NC_004065.1 | + | 173874 | 0.66 | 0.846154 |
Target: 5'- uGAUC-GAUGcGACUCGCUcGCCgagGCUGCa -3' miRNA: 3'- cCUGGaCUGC-CUGGGCGA-CGG---CGACG- -5' |
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16023 | 5' | -60.5 | NC_004065.1 | + | 41154 | 0.66 | 0.822874 |
Target: 5'- uGGuACCUGAgccagaGGACCaucuCGUUGUagaGCUGCg -3' miRNA: 3'- -CC-UGGACUg-----CCUGG----GCGACGg--CGACG- -5' |
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16023 | 5' | -60.5 | NC_004065.1 | + | 89148 | 0.66 | 0.814801 |
Target: 5'- aGGGuCUcguUGAUGGACUCGCUGgCgGCgGCc -3' miRNA: 3'- -CCU-GG---ACUGCCUGGGCGAC-GgCGaCG- -5' |
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16023 | 5' | -60.5 | NC_004065.1 | + | 32247 | 0.66 | 0.841616 |
Target: 5'- cGGACUcgccgccaucaucgGACGGcuccgaguGCCCGCUGuCCGCg-- -3' miRNA: 3'- -CCUGGa-------------CUGCC--------UGGGCGAC-GGCGacg -5' |
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16023 | 5' | -60.5 | NC_004065.1 | + | 207103 | 0.66 | 0.814801 |
Target: 5'- cGACgaGACGGAaCCGCcGaCCGCcGCc -3' miRNA: 3'- cCUGgaCUGCCUgGGCGaC-GGCGaCG- -5' |
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16023 | 5' | -60.5 | NC_004065.1 | + | 67807 | 0.66 | 0.822874 |
Target: 5'- cGGGCaagaagaGACGGGCgCCGgacgUGCCGCcGCa -3' miRNA: 3'- -CCUGga-----CUGCCUG-GGCg---ACGGCGaCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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