miRNA display CGI


Results 21 - 40 of 162 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16023 5' -60.5 NC_004065.1 + 173874 0.66 0.846154
Target:  5'- uGAUC-GAUGcGACUCGCUcGCCgagGCUGCa -3'
miRNA:   3'- cCUGGaCUGC-CUGGGCGA-CGG---CGACG- -5'
16023 5' -60.5 NC_004065.1 + 130419 0.66 0.846154
Target:  5'- cGACCguccGGCGGAauuCgUGCUGCagcaGCUGUg -3'
miRNA:   3'- cCUGGa---CUGCCU---GgGCGACGg---CGACG- -5'
16023 5' -60.5 NC_004065.1 + 130613 0.66 0.830795
Target:  5'- -uGCCgcuCGGGCCC-CUGCUGCgaGCg -3'
miRNA:   3'- ccUGGacuGCCUGGGcGACGGCGa-CG- -5'
16023 5' -60.5 NC_004065.1 + 207103 0.66 0.814801
Target:  5'- cGACgaGACGGAaCCGCcGaCCGCcGCc -3'
miRNA:   3'- cCUGgaCUGCCUgGGCGaC-GGCGaCG- -5'
16023 5' -60.5 NC_004065.1 + 127030 0.66 0.822073
Target:  5'- cGGACCUaaagcucgucaagGGCGGGCgCCGCgacuacuaCCGC-GCg -3'
miRNA:   3'- -CCUGGA-------------CUGCCUG-GGCGac------GGCGaCG- -5'
16023 5' -60.5 NC_004065.1 + 159723 0.66 0.822874
Target:  5'- cGGCCgugugGGgGGugCUGCUgaagGCCGCcGCg -3'
miRNA:   3'- cCUGGa----CUgCCugGGCGA----CGGCGaCG- -5'
16023 5' -60.5 NC_004065.1 + 133343 0.66 0.806581
Target:  5'- -aACCUGGCGGugUUGUucuUGCCGgUGa -3'
miRNA:   3'- ccUGGACUGCCugGGCG---ACGGCgACg -5'
16023 5' -60.5 NC_004065.1 + 68568 0.66 0.806581
Target:  5'- uGGGCCUGGCGaGCaaCGCgGCgGCgGCg -3'
miRNA:   3'- -CCUGGACUGCcUGg-GCGaCGgCGaCG- -5'
16023 5' -60.5 NC_004065.1 + 33588 0.66 0.822874
Target:  5'- -cGCgUGGCGGACggcaucaCGaUGCUGCUGCg -3'
miRNA:   3'- ccUGgACUGCCUGg------GCgACGGCGACG- -5'
16023 5' -60.5 NC_004065.1 + 89148 0.66 0.814801
Target:  5'- aGGGuCUcguUGAUGGACUCGCUGgCgGCgGCc -3'
miRNA:   3'- -CCU-GG---ACUGCCUGGGCGAC-GgCGaCG- -5'
16023 5' -60.5 NC_004065.1 + 102928 0.66 0.846154
Target:  5'- uGGACggcGACGGAgCUGCUGCCuaaGCUc- -3'
miRNA:   3'- -CCUGga-CUGCCUgGGCGACGG---CGAcg -5'
16023 5' -60.5 NC_004065.1 + 170076 0.66 0.822073
Target:  5'- -aACCUGGCGGGCaCCacuccggGCUucugGCCGCgccGCg -3'
miRNA:   3'- ccUGGACUGCCUG-GG-------CGA----CGGCGa--CG- -5'
16023 5' -60.5 NC_004065.1 + 31489 0.67 0.772385
Target:  5'- cGGACCUGguGCGGcugagguacaucGCCuCGUgcgacgUGCCGCgggGCu -3'
miRNA:   3'- -CCUGGAC--UGCC------------UGG-GCG------ACGGCGa--CG- -5'
16023 5' -60.5 NC_004065.1 + 68247 0.67 0.754596
Target:  5'- uGACgagGACGGACCgGCUGCUG--GCg -3'
miRNA:   3'- cCUGga-CUGCCUGGgCGACGGCgaCG- -5'
16023 5' -60.5 NC_004065.1 + 27707 0.67 0.798223
Target:  5'- gGGAUCgGGCGucuGGCCCGUgcucGCgCGCUGUc -3'
miRNA:   3'- -CCUGGaCUGC---CUGGGCGa---CG-GCGACG- -5'
16023 5' -60.5 NC_004065.1 + 99379 0.67 0.772385
Target:  5'- uGGGCaUGACGGGCgUggGCUGCCugGCgGCg -3'
miRNA:   3'- -CCUGgACUGCCUGgG--CGACGG--CGaCG- -5'
16023 5' -60.5 NC_004065.1 + 77141 0.67 0.754596
Target:  5'- -uGCCUGcgGCGcGACCCGCaGCagaaaugGCUGCu -3'
miRNA:   3'- ccUGGAC--UGC-CUGGGCGaCGg------CGACG- -5'
16023 5' -60.5 NC_004065.1 + 203395 0.67 0.781117
Target:  5'- gGGACgCUG-Cu--CCCGCUGUCGCcGCa -3'
miRNA:   3'- -CCUG-GACuGccuGGGCGACGGCGaCG- -5'
16023 5' -60.5 NC_004065.1 + 42670 0.67 0.798223
Target:  5'- gGGACgCUGACGcGAa--GCUGCUcgcguucggaGCUGCa -3'
miRNA:   3'- -CCUG-GACUGC-CUgggCGACGG----------CGACG- -5'
16023 5' -60.5 NC_004065.1 + 200439 0.67 0.798223
Target:  5'- aGGACC--GCGGuCaCCGCgGCCGCcGUc -3'
miRNA:   3'- -CCUGGacUGCCuG-GGCGaCGGCGaCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.