miRNA display CGI


Results 61 - 80 of 162 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16023 5' -60.5 NC_004065.1 + 6173 0.67 0.789733
Target:  5'- cGGGCCgGGCGG-CCgaguacgaGUUGUCGCUcGCg -3'
miRNA:   3'- -CCUGGaCUGCCuGGg-------CGACGGCGA-CG- -5'
16023 5' -60.5 NC_004065.1 + 88419 0.67 0.789733
Target:  5'- -cGCCggcaGCGGAgCCCGCcGCCGUcGCg -3'
miRNA:   3'- ccUGGac--UGCCU-GGGCGaCGGCGaCG- -5'
16023 5' -60.5 NC_004065.1 + 191952 0.67 0.798223
Target:  5'- -aGCCUcACGGGCCUGUUGuCCgGCgGCa -3'
miRNA:   3'- ccUGGAcUGCCUGGGCGAC-GG-CGaCG- -5'
16023 5' -60.5 NC_004065.1 + 139660 0.67 0.798223
Target:  5'- uGugC-GGCGcGugCgGCgGCCGCUGCu -3'
miRNA:   3'- cCugGaCUGC-CugGgCGaCGGCGACG- -5'
16023 5' -60.5 NC_004065.1 + 80299 0.68 0.745556
Target:  5'- uGGACCgcuaUGAguccgaGGGCCgGCgcgGCCGCgGCc -3'
miRNA:   3'- -CCUGG----ACUg-----CCUGGgCGa--CGGCGaCG- -5'
16023 5' -60.5 NC_004065.1 + 130358 0.68 0.745556
Target:  5'- cGGACgCUGuCGG-CgCCGC-GCCGCcgGCu -3'
miRNA:   3'- -CCUG-GACuGCCuG-GGCGaCGGCGa-CG- -5'
16023 5' -60.5 NC_004065.1 + 205462 0.68 0.723517
Target:  5'- cGGACCgcgcgaucccgacGAgGGGCUCGUcuCCGCUGCc -3'
miRNA:   3'- -CCUGGa------------CUgCCUGGGCGacGGCGACG- -5'
16023 5' -60.5 NC_004065.1 + 5216 0.68 0.745556
Target:  5'- cGGACa-GACGGcggucgugACCgUGCUGCCGCccGCu -3'
miRNA:   3'- -CCUGgaCUGCC--------UGG-GCGACGGCGa-CG- -5'
16023 5' -60.5 NC_004065.1 + 119636 0.68 0.704843
Target:  5'- cGGCCgUGGCGuguucgaacGGCCUGCgcgagaggucccaGCCGCUGCg -3'
miRNA:   3'- cCUGG-ACUGC---------CUGGGCGa------------CGGCGACG- -5'
16023 5' -60.5 NC_004065.1 + 61447 0.68 0.745556
Target:  5'- aGGGCC-GGCccGACCCGCU-CCGUgaUGCg -3'
miRNA:   3'- -CCUGGaCUGc-CUGGGCGAcGGCG--ACG- -5'
16023 5' -60.5 NC_004065.1 + 117150 0.68 0.708597
Target:  5'- cGGGCCUGGCccugagucugccGGACgaGCUGCUGUccgacgGCa -3'
miRNA:   3'- -CCUGGACUG------------CCUGggCGACGGCGa-----CG- -5'
16023 5' -60.5 NC_004065.1 + 201336 0.68 0.727221
Target:  5'- gGGugCUGcuucuGCGuGA-CUGCUGuuGCUGCg -3'
miRNA:   3'- -CCugGAC-----UGC-CUgGGCGACggCGACG- -5'
16023 5' -60.5 NC_004065.1 + 105375 0.68 0.727221
Target:  5'- cGGACC---CGGACUCGCUGaCgGCcgGCg -3'
miRNA:   3'- -CCUGGacuGCCUGGGCGAC-GgCGa-CG- -5'
16023 5' -60.5 NC_004065.1 + 162152 0.68 0.727221
Target:  5'- gGGcaACCUGAuCGGccGCCgGCUGCgGCgcaGCg -3'
miRNA:   3'- -CC--UGGACU-GCC--UGGgCGACGgCGa--CG- -5'
16023 5' -60.5 NC_004065.1 + 97670 0.68 0.744647
Target:  5'- cGAUCUGGCgcaGGAUgugauacucgcggUCGCUGCCGCcGCc -3'
miRNA:   3'- cCUGGACUG---CCUG-------------GGCGACGGCGaCG- -5'
16023 5' -60.5 NC_004065.1 + 68184 0.68 0.727221
Target:  5'- cGGAgCUGuCGG-CCC-C-GCCGCUGUa -3'
miRNA:   3'- -CCUgGACuGCCuGGGcGaCGGCGACG- -5'
16023 5' -60.5 NC_004065.1 + 226455 0.68 0.736428
Target:  5'- cGAUCgaGAcCGGGCUCGCcuucugccagcGCCGCUGCg -3'
miRNA:   3'- cCUGGa-CU-GCCUGGGCGa----------CGGCGACG- -5'
16023 5' -60.5 NC_004065.1 + 78535 0.68 0.727221
Target:  5'- ---gCUGA-GGAgCCCGUccgcgUGCCGCUGCu -3'
miRNA:   3'- ccugGACUgCCU-GGGCG-----ACGGCGACG- -5'
16023 5' -60.5 NC_004065.1 + 69392 0.68 0.699196
Target:  5'- cGGCgCUGGCGGAacaGCUGCCGaCgggGCg -3'
miRNA:   3'- cCUG-GACUGCCUgggCGACGGC-Ga--CG- -5'
16023 5' -60.5 NC_004065.1 + 54633 0.68 0.699196
Target:  5'- aGGACg-GugGGggaucgucguccGCCUGCUGCCGCa-- -3'
miRNA:   3'- -CCUGgaCugCC------------UGGGCGACGGCGacg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.