miRNA display CGI


Results 1 - 20 of 162 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16023 5' -60.5 NC_004065.1 + 65638 1.12 0.001258
Target:  5'- aGGACCUGACGGACCCGCUGCCGCUGCc -3'
miRNA:   3'- -CCUGGACUGCCUGGGCGACGGCGACG- -5'
16023 5' -60.5 NC_004065.1 + 79607 0.79 0.212061
Target:  5'- uGGACa-GGcCGGACCCGCUGCgcgcgcggaCGCUGCg -3'
miRNA:   3'- -CCUGgaCU-GCCUGGGCGACG---------GCGACG- -5'
16023 5' -60.5 NC_004065.1 + 78082 0.77 0.260226
Target:  5'- -cACCUGuucGCGGACCCGCUGUgCGCgGCu -3'
miRNA:   3'- ccUGGAC---UGCCUGGGCGACG-GCGaCG- -5'
16023 5' -60.5 NC_004065.1 + 104991 0.77 0.272677
Target:  5'- cGGGCCUGaACGGGCggcugugugacgagCCGCUGCuggcguacgugagcgCGCUGCa -3'
miRNA:   3'- -CCUGGAC-UGCCUG--------------GGCGACG---------------GCGACG- -5'
16023 5' -60.5 NC_004065.1 + 101253 0.77 0.284349
Target:  5'- -cGCCggcGACGGcGCCCucaacGCUGCCGCUGCc -3'
miRNA:   3'- ccUGGa--CUGCC-UGGG-----CGACGGCGACG- -5'
16023 5' -60.5 NC_004065.1 + 109207 0.76 0.29065
Target:  5'- aGGGCCgcguacGCGGGCCUGUUcacGCCGCUGUa -3'
miRNA:   3'- -CCUGGac----UGCCUGGGCGA---CGGCGACG- -5'
16023 5' -60.5 NC_004065.1 + 122233 0.76 0.310206
Target:  5'- cGGGCC-GGCGGGucguuCCUGUcGCCGCUGCu -3'
miRNA:   3'- -CCUGGaCUGCCU-----GGGCGaCGGCGACG- -5'
16023 5' -60.5 NC_004065.1 + 35948 0.76 0.310206
Target:  5'- cGGCCgcagGucguCGGACUCGC-GCCGCUGCu -3'
miRNA:   3'- cCUGGa---Cu---GCCUGGGCGaCGGCGACG- -5'
16023 5' -60.5 NC_004065.1 + 129693 0.76 0.323792
Target:  5'- cGGACgaguguCUGACGGACgCGgUGUgGCUGCg -3'
miRNA:   3'- -CCUG------GACUGCCUGgGCgACGgCGACG- -5'
16023 5' -60.5 NC_004065.1 + 63866 0.75 0.352275
Target:  5'- cGGugCaGACGucGGCgCCGCUGCCGCcgGCg -3'
miRNA:   3'- -CCugGaCUGC--CUG-GGCGACGGCGa-CG- -5'
16023 5' -60.5 NC_004065.1 + 212233 0.75 0.352275
Target:  5'- gGGAUCgcgccaaacgcGACGGccACCCGCUgucuaaGCCGCUGCa -3'
miRNA:   3'- -CCUGGa----------CUGCC--UGGGCGA------CGGCGACG- -5'
16023 5' -60.5 NC_004065.1 + 99942 0.75 0.352275
Target:  5'- cGGACCgccGCGGcGgCgGCUGCUGCUGCg -3'
miRNA:   3'- -CCUGGac-UGCC-UgGgCGACGGCGACG- -5'
16023 5' -60.5 NC_004065.1 + 101605 0.74 0.390307
Target:  5'- aGACUcggUGGCGG-CgCCGCcGCCGCUGCc -3'
miRNA:   3'- cCUGG---ACUGCCuG-GGCGaCGGCGACG- -5'
16023 5' -60.5 NC_004065.1 + 149178 0.74 0.397432
Target:  5'- uGGCCUGGCGcucguccGAUCCGCUcgcucggcGCUGCUGCu -3'
miRNA:   3'- cCUGGACUGC-------CUGGGCGA--------CGGCGACG- -5'
16023 5' -60.5 NC_004065.1 + 105195 0.74 0.413561
Target:  5'- uGGACCaGGCGGAgCCGCUGUucguggaCGCccgGCg -3'
miRNA:   3'- -CCUGGaCUGCCUgGGCGACG-------GCGa--CG- -5'
16023 5' -60.5 NC_004065.1 + 223271 0.74 0.414378
Target:  5'- aGGACCacgagGACcGACCCGagUGCCGCcGCg -3'
miRNA:   3'- -CCUGGa----CUGcCUGGGCg-ACGGCGaCG- -5'
16023 5' -60.5 NC_004065.1 + 78693 0.74 0.414378
Target:  5'- uGAUCUGAgCGGAUCUGCUGCgGUUGa -3'
miRNA:   3'- cCUGGACU-GCCUGGGCGACGgCGACg -5'
16023 5' -60.5 NC_004065.1 + 106334 0.73 0.430924
Target:  5'- cGGACaagGGCGGcCCgGC-GCUGCUGCa -3'
miRNA:   3'- -CCUGga-CUGCCuGGgCGaCGGCGACG- -5'
16023 5' -60.5 NC_004065.1 + 6080 0.73 0.437649
Target:  5'- uGACCcugccgcUGACGaGACCCggucuccuccuggGCUGCCGCUGg -3'
miRNA:   3'- cCUGG-------ACUGC-CUGGG-------------CGACGGCGACg -5'
16023 5' -60.5 NC_004065.1 + 61454 0.73 0.44785
Target:  5'- cGGGCCgaGAC--GCCCGCUGUCGCcGCc -3'
miRNA:   3'- -CCUGGa-CUGccUGGGCGACGGCGaCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.