miRNA display CGI


Results 21 - 40 of 162 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16023 5' -60.5 NC_004065.1 + 66603 0.73 0.45645
Target:  5'- uGGACgCgGACaGGAUCCGgaGCCGCggGCu -3'
miRNA:   3'- -CCUG-GaCUG-CCUGGGCgaCGGCGa-CG- -5'
16023 5' -60.5 NC_004065.1 + 206306 0.73 0.45645
Target:  5'- cGGACCgGACGGACCgCGaCUGCUuGUcggGCg -3'
miRNA:   3'- -CCUGGaCUGCCUGG-GC-GACGG-CGa--CG- -5'
16023 5' -60.5 NC_004065.1 + 141650 0.73 0.45645
Target:  5'- aGGGCggUGGCGGugCCGCgGCCGCg-- -3'
miRNA:   3'- -CCUGg-ACUGCCugGGCGaCGGCGacg -5'
16023 5' -60.5 NC_004065.1 + 31906 0.73 0.465138
Target:  5'- cGGGCCUGACGcGGCgCGUcGCCGaCaGCg -3'
miRNA:   3'- -CCUGGACUGC-CUGgGCGaCGGC-GaCG- -5'
16023 5' -60.5 NC_004065.1 + 129408 0.73 0.465138
Target:  5'- cGACgCUGAUGGGgCUGCUGaaGCUGUg -3'
miRNA:   3'- cCUG-GACUGCCUgGGCGACggCGACG- -5'
16023 5' -60.5 NC_004065.1 + 135729 0.72 0.473912
Target:  5'- gGGAUCUGGUGGAgCUGUUGCUGCUuucGCg -3'
miRNA:   3'- -CCUGGACUGCCUgGGCGACGGCGA---CG- -5'
16023 5' -60.5 NC_004065.1 + 89827 0.72 0.482768
Target:  5'- cGACCUGcuggUGGugCUGCuacUGCCGCUGUu -3'
miRNA:   3'- cCUGGACu---GCCugGGCG---ACGGCGACG- -5'
16023 5' -60.5 NC_004065.1 + 195783 0.72 0.500713
Target:  5'- uGACCaUGGCGGA-CCGCggGCC-CUGCg -3'
miRNA:   3'- cCUGG-ACUGCCUgGGCGa-CGGcGACG- -5'
16023 5' -60.5 NC_004065.1 + 60427 0.72 0.509796
Target:  5'- cGACgUGACGGccCCCGCgaaccgGCCGgaGCc -3'
miRNA:   3'- cCUGgACUGCCu-GGGCGa-----CGGCgaCG- -5'
16023 5' -60.5 NC_004065.1 + 77505 0.72 0.509796
Target:  5'- cGGcGCC-GGCGGAgCCCgaggaGCUGCgGCUGCu -3'
miRNA:   3'- -CC-UGGaCUGCCU-GGG-----CGACGgCGACG- -5'
16023 5' -60.5 NC_004065.1 + 178510 0.72 0.509796
Target:  5'- aGGcuuCUUGcuAgGGGCCUGCUGCUGCUGUu -3'
miRNA:   3'- -CCu--GGAC--UgCCUGGGCGACGGCGACG- -5'
16023 5' -60.5 NC_004065.1 + 127615 0.72 0.516195
Target:  5'- gGGACC-GGCGcuCUacgugcaccgcucgCGCUGCCGCUGCg -3'
miRNA:   3'- -CCUGGaCUGCcuGG--------------GCGACGGCGACG- -5'
16023 5' -60.5 NC_004065.1 + 99143 0.71 0.525391
Target:  5'- cGGCCgacGGCGGuaaacaccguggccGCCUccaGCUGCUGCUGCa -3'
miRNA:   3'- cCUGGa--CUGCC--------------UGGG---CGACGGCGACG- -5'
16023 5' -60.5 NC_004065.1 + 173380 0.71 0.537437
Target:  5'- cGACggUGAagGGugCCGCgGCCGCUGCc -3'
miRNA:   3'- cCUGg-ACUg-CCugGGCGaCGGCGACG- -5'
16023 5' -60.5 NC_004065.1 + 68310 0.71 0.537437
Target:  5'- cGGACUUcgaGACGGugUCGUcGUgGCUGCg -3'
miRNA:   3'- -CCUGGA---CUGCCugGGCGaCGgCGACG- -5'
16023 5' -60.5 NC_004065.1 + 141605 0.71 0.537437
Target:  5'- cGACggcGGCGGGCuCCGCUGCCgGCggugGCg -3'
miRNA:   3'- cCUGga-CUGCCUG-GGCGACGG-CGa---CG- -5'
16023 5' -60.5 NC_004065.1 + 190244 0.71 0.55333
Target:  5'- cGGAUCUGAgcacaauccuucccCGGA-CCGa-GCCGCUGCg -3'
miRNA:   3'- -CCUGGACU--------------GCCUgGGCgaCGGCGACG- -5'
16023 5' -60.5 NC_004065.1 + 19507 0.71 0.55615
Target:  5'- gGGAC--GGCGGAaCCGCUGCCGaacgGCg -3'
miRNA:   3'- -CCUGgaCUGCCUgGGCGACGGCga--CG- -5'
16023 5' -60.5 NC_004065.1 + 164682 0.71 0.55615
Target:  5'- cGACC-GACccACCCGCaGCUGCUGCc -3'
miRNA:   3'- cCUGGaCUGccUGGGCGaCGGCGACG- -5'
16023 5' -60.5 NC_004065.1 + 30975 0.71 0.565578
Target:  5'- aGACgaGugGGAUgCGCUcGCCGCgucggGCg -3'
miRNA:   3'- cCUGgaCugCCUGgGCGA-CGGCGa----CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.