miRNA display CGI


Results 41 - 60 of 162 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16023 5' -60.5 NC_004065.1 + 48466 0.71 0.575046
Target:  5'- aGGAggUGACGGugCCGUaGUCGCcGCg -3'
miRNA:   3'- -CCUggACUGCCugGGCGaCGGCGaCG- -5'
16023 5' -60.5 NC_004065.1 + 66641 0.71 0.575046
Target:  5'- -uGCgUGGCGGACgCGCUGaCGCUGa -3'
miRNA:   3'- ccUGgACUGCCUGgGCGACgGCGACg -5'
16023 5' -60.5 NC_004065.1 + 124461 0.71 0.575046
Target:  5'- -cGCC-GACGG-CgCGCcgUGCCGCUGCg -3'
miRNA:   3'- ccUGGaCUGCCuGgGCG--ACGGCGACG- -5'
16023 5' -60.5 NC_004065.1 + 105941 0.7 0.584551
Target:  5'- uGGGCCUGcaccCGGGCUucgCGCUGaCCGUggUGCg -3'
miRNA:   3'- -CCUGGACu---GCCUGG---GCGAC-GGCG--ACG- -5'
16023 5' -60.5 NC_004065.1 + 28526 0.7 0.594085
Target:  5'- -uGCCUGACGaGaguagcGCCCGCcGCaUGCUGCg -3'
miRNA:   3'- ccUGGACUGC-C------UGGGCGaCG-GCGACG- -5'
16023 5' -60.5 NC_004065.1 + 60455 0.7 0.594085
Target:  5'- aGGACCacgucGACGGAgcuCUCGaCUGCCGC-GCc -3'
miRNA:   3'- -CCUGGa----CUGCCU---GGGC-GACGGCGaCG- -5'
16023 5' -60.5 NC_004065.1 + 66924 0.7 0.594085
Target:  5'- aGACCUGACGaACCCGCUacGCCug-GCc -3'
miRNA:   3'- cCUGGACUGCcUGGGCGA--CGGcgaCG- -5'
16023 5' -60.5 NC_004065.1 + 66368 0.7 0.594085
Target:  5'- aGGCCgcuGCuGcCuCCGCUGCCGCUGCc -3'
miRNA:   3'- cCUGGac-UGcCuG-GGCGACGGCGACG- -5'
16023 5' -60.5 NC_004065.1 + 118461 0.7 0.607473
Target:  5'- cGGCCgGGCGGuugGCucucggugauaguugCCGCUGuuGCUGCg -3'
miRNA:   3'- cCUGGaCUGCC---UG---------------GGCGACggCGACG- -5'
16023 5' -60.5 NC_004065.1 + 94946 0.7 0.613222
Target:  5'- cGACuaCUGGCgcugcgGGGCCCGCUccGCgGCUGCc -3'
miRNA:   3'- cCUG--GACUG------CCUGGGCGA--CGgCGACG- -5'
16023 5' -60.5 NC_004065.1 + 68736 0.7 0.622812
Target:  5'- --uCCUGACGGGgUCGCUGCCGg--- -3'
miRNA:   3'- ccuGGACUGCCUgGGCGACGGCgacg -5'
16023 5' -60.5 NC_004065.1 + 23263 0.7 0.622812
Target:  5'- gGGACCgacGCGGuacgacuggcGCCCGUaGCCGCgGCc -3'
miRNA:   3'- -CCUGGac-UGCC----------UGGGCGaCGGCGaCG- -5'
16023 5' -60.5 NC_004065.1 + 120746 0.7 0.622812
Target:  5'- cGGCgUGACccaGGACaCUGCUGCCGCg-- -3'
miRNA:   3'- cCUGgACUG---CCUG-GGCGACGGCGacg -5'
16023 5' -60.5 NC_004065.1 + 34898 0.7 0.632408
Target:  5'- uGGCCUGGCGGaaaguagacaGCCCGgUGCgG-UGCg -3'
miRNA:   3'- cCUGGACUGCC----------UGGGCgACGgCgACG- -5'
16023 5' -60.5 NC_004065.1 + 90958 0.7 0.632408
Target:  5'- cGGGCCaGACGGGCaCGCUGCgGUc-- -3'
miRNA:   3'- -CCUGGaCUGCCUGgGCGACGgCGacg -5'
16023 5' -60.5 NC_004065.1 + 67330 0.7 0.632408
Target:  5'- uGGAcuuCCUGACguacgcgagagGGAagCCGCUGCCGgUGUa -3'
miRNA:   3'- -CCU---GGACUG-----------CCUg-GGCGACGGCgACG- -5'
16023 5' -60.5 NC_004065.1 + 69443 0.7 0.636247
Target:  5'- uGGACUcGACGGACaucgugucgcagaugUCGC-GCCgGCUGCg -3'
miRNA:   3'- -CCUGGaCUGCCUG---------------GGCGaCGG-CGACG- -5'
16023 5' -60.5 NC_004065.1 + 63060 0.69 0.642005
Target:  5'- cGAUCc--CGGACCUGCUGUCGC-GCg -3'
miRNA:   3'- cCUGGacuGCCUGGGCGACGGCGaCG- -5'
16023 5' -60.5 NC_004065.1 + 39795 0.69 0.651594
Target:  5'- aGGACCcGGCGGG-CCGCUcGUCacugucacaguGCUGCa -3'
miRNA:   3'- -CCUGGaCUGCCUgGGCGA-CGG-----------CGACG- -5'
16023 5' -60.5 NC_004065.1 + 120391 0.69 0.651594
Target:  5'- cGGAUCgGGCGGACgCUGCUccuucGCCGCg-- -3'
miRNA:   3'- -CCUGGaCUGCCUG-GGCGA-----CGGCGacg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.