miRNA display CGI


Results 21 - 40 of 162 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16023 5' -60.5 NC_004065.1 + 127030 0.66 0.822073
Target:  5'- cGGACCUaaagcucgucaagGGCGGGCgCCGCgacuacuaCCGC-GCg -3'
miRNA:   3'- -CCUGGA-------------CUGCCUG-GGCGac------GGCGaCG- -5'
16023 5' -60.5 NC_004065.1 + 170076 0.66 0.822073
Target:  5'- -aACCUGGCGGGCaCCacuccggGCUucugGCCGCgccGCg -3'
miRNA:   3'- ccUGGACUGCCUG-GG-------CGA----CGGCGa--CG- -5'
16023 5' -60.5 NC_004065.1 + 135066 0.66 0.818048
Target:  5'- cGGcaGCCgcgGAgCGGGcCCCGCagcgccaguagucgGCUGCUGCa -3'
miRNA:   3'- -CC--UGGa--CU-GCCU-GGGCGa-------------CGGCGACG- -5'
16023 5' -60.5 NC_004065.1 + 161352 0.66 0.814801
Target:  5'- -cGCCUGGCacGACUCGUacGCCGaCUGCg -3'
miRNA:   3'- ccUGGACUGc-CUGGGCGa-CGGC-GACG- -5'
16023 5' -60.5 NC_004065.1 + 225398 0.66 0.814801
Target:  5'- uGGCgCUGAUGGugCCGCUcccucucgaaggGUCGUgGCg -3'
miRNA:   3'- cCUG-GACUGCCugGGCGA------------CGGCGaCG- -5'
16023 5' -60.5 NC_004065.1 + 207103 0.66 0.814801
Target:  5'- cGACgaGACGGAaCCGCcGaCCGCcGCc -3'
miRNA:   3'- cCUGgaCUGCCUgGGCGaC-GGCGaCG- -5'
16023 5' -60.5 NC_004065.1 + 68867 0.66 0.814801
Target:  5'- uGACCga--GGACCUGCUGUacCUGCa -3'
miRNA:   3'- cCUGGacugCCUGGGCGACGgcGACG- -5'
16023 5' -60.5 NC_004065.1 + 89148 0.66 0.814801
Target:  5'- aGGGuCUcguUGAUGGACUCGCUGgCgGCgGCc -3'
miRNA:   3'- -CCU-GG---ACUGCCUGGGCGAC-GgCGaCG- -5'
16023 5' -60.5 NC_004065.1 + 28337 0.66 0.813168
Target:  5'- aGGGCCUGucCGcGuugugccgccgcaGCCuCGCUuucgcgcGCCGCUGCu -3'
miRNA:   3'- -CCUGGACu-GC-C-------------UGG-GCGA-------CGGCGACG- -5'
16023 5' -60.5 NC_004065.1 + 133343 0.66 0.806581
Target:  5'- -aACCUGGCGGugUUGUucuUGCCGgUGa -3'
miRNA:   3'- ccUGGACUGCCugGGCG---ACGGCgACg -5'
16023 5' -60.5 NC_004065.1 + 68568 0.66 0.806581
Target:  5'- uGGGCCUGGCGaGCaaCGCgGCgGCgGCg -3'
miRNA:   3'- -CCUGGACUGCcUGg-GCGaCGgCGaCG- -5'
16023 5' -60.5 NC_004065.1 + 33659 0.66 0.806581
Target:  5'- cGACCgucCGG-CgCGCggggaggGCCGCUGCg -3'
miRNA:   3'- cCUGGacuGCCuGgGCGa------CGGCGACG- -5'
16023 5' -60.5 NC_004065.1 + 191952 0.67 0.798223
Target:  5'- -aGCCUcACGGGCCUGUUGuCCgGCgGCa -3'
miRNA:   3'- ccUGGAcUGCCUGGGCGAC-GG-CGaCG- -5'
16023 5' -60.5 NC_004065.1 + 139660 0.67 0.798223
Target:  5'- uGugC-GGCGcGugCgGCgGCCGCUGCu -3'
miRNA:   3'- cCugGaCUGC-CugGgCGaCGGCGACG- -5'
16023 5' -60.5 NC_004065.1 + 97001 0.67 0.798223
Target:  5'- -uGCUgcGACG--UCUGCUGCCGCUGCu -3'
miRNA:   3'- ccUGGa-CUGCcuGGGCGACGGCGACG- -5'
16023 5' -60.5 NC_004065.1 + 166894 0.67 0.798223
Target:  5'- uGGCgUUGAUGGGCUCGCUG-CGCgGUa -3'
miRNA:   3'- cCUG-GACUGCCUGGGCGACgGCGaCG- -5'
16023 5' -60.5 NC_004065.1 + 27707 0.67 0.798223
Target:  5'- gGGAUCgGGCGucuGGCCCGUgcucGCgCGCUGUc -3'
miRNA:   3'- -CCUGGaCUGC---CUGGGCGa---CG-GCGACG- -5'
16023 5' -60.5 NC_004065.1 + 200439 0.67 0.798223
Target:  5'- aGGACC--GCGGuCaCCGCgGCCGCcGUc -3'
miRNA:   3'- -CCUGGacUGCCuG-GGCGaCGGCGaCG- -5'
16023 5' -60.5 NC_004065.1 + 42670 0.67 0.798223
Target:  5'- gGGACgCUGACGcGAa--GCUGCUcgcguucggaGCUGCa -3'
miRNA:   3'- -CCUG-GACUGC-CUgggCGACGG----------CGACG- -5'
16023 5' -60.5 NC_004065.1 + 115647 0.67 0.798223
Target:  5'- gGGcACCUGAgGcaaGGCCUGCUGCgGCg-- -3'
miRNA:   3'- -CC-UGGACUgC---CUGGGCGACGgCGacg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.