miRNA display CGI


Results 41 - 60 of 162 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16023 5' -60.5 NC_004065.1 + 151547 0.67 0.79738
Target:  5'- aGGGCCgcaaGGACaCCGacgaccuCUGCCGCaGCa -3'
miRNA:   3'- -CCUGGacugCCUG-GGC-------GACGGCGaCG- -5'
16023 5' -60.5 NC_004065.1 + 139777 0.67 0.795689
Target:  5'- aGGugugaCUGACGGugaugcGCUCugucaugaauaaaaGCUGCCGCUGUg -3'
miRNA:   3'- -CCug---GACUGCC------UGGG--------------CGACGGCGACG- -5'
16023 5' -60.5 NC_004065.1 + 88419 0.67 0.789733
Target:  5'- -cGCCggcaGCGGAgCCCGCcGCCGUcGCg -3'
miRNA:   3'- ccUGGac--UGCCU-GGGCGaCGGCGaCG- -5'
16023 5' -60.5 NC_004065.1 + 6173 0.67 0.789733
Target:  5'- cGGGCCgGGCGG-CCgaguacgaGUUGUCGCUcGCg -3'
miRNA:   3'- -CCUGGaCUGCCuGGg-------CGACGGCGA-CG- -5'
16023 5' -60.5 NC_004065.1 + 32202 0.67 0.788877
Target:  5'- gGGACCUGGacGACCCcaacgugGC-GCCGCggGCg -3'
miRNA:   3'- -CCUGGACUgcCUGGG-------CGaCGGCGa-CG- -5'
16023 5' -60.5 NC_004065.1 + 167917 0.67 0.781117
Target:  5'- -cGCCUcccGCGagcguaacGACCgcCGCUGCCGCUGCc -3'
miRNA:   3'- ccUGGAc--UGC--------CUGG--GCGACGGCGACG- -5'
16023 5' -60.5 NC_004065.1 + 162337 0.67 0.781117
Target:  5'- cGGAagaagagaUGGaGGGCCCGCcGCCGCcGCc -3'
miRNA:   3'- -CCUgg------ACUgCCUGGGCGaCGGCGaCG- -5'
16023 5' -60.5 NC_004065.1 + 203395 0.67 0.781117
Target:  5'- gGGACgCUG-Cu--CCCGCUGUCGCcGCa -3'
miRNA:   3'- -CCUG-GACuGccuGGGCGACGGCGaCG- -5'
16023 5' -60.5 NC_004065.1 + 36112 0.67 0.781117
Target:  5'- cGGCa--ACGGGgCCGCUGCCgGCgGCg -3'
miRNA:   3'- cCUGgacUGCCUgGGCGACGG-CGaCG- -5'
16023 5' -60.5 NC_004065.1 + 10448 0.67 0.781117
Target:  5'- gGGACCaUGACGGAUCUGUccaaGUuaacagauCGCUGUg -3'
miRNA:   3'- -CCUGG-ACUGCCUGGGCGa---CG--------GCGACG- -5'
16023 5' -60.5 NC_004065.1 + 99379 0.67 0.772385
Target:  5'- uGGGCaUGACGGGCgUggGCUGCCugGCgGCg -3'
miRNA:   3'- -CCUGgACUGCCUGgG--CGACGG--CGaCG- -5'
16023 5' -60.5 NC_004065.1 + 472 0.67 0.772385
Target:  5'- -cGCCUGAgucagccucCGGGCCgCGC-GCCGCguccGCg -3'
miRNA:   3'- ccUGGACU---------GCCUGG-GCGaCGGCGa---CG- -5'
16023 5' -60.5 NC_004065.1 + 31489 0.67 0.772385
Target:  5'- cGGACCUGguGCGGcugagguacaucGCCuCGUgcgacgUGCCGCgggGCu -3'
miRNA:   3'- -CCUGGAC--UGCC------------UGG-GCG------ACGGCGa--CG- -5'
16023 5' -60.5 NC_004065.1 + 108799 0.67 0.772385
Target:  5'- -aACCUGGCGuGGCggCCGUUcaGCCGCgGCa -3'
miRNA:   3'- ccUGGACUGC-CUG--GGCGA--CGGCGaCG- -5'
16023 5' -60.5 NC_004065.1 + 155932 0.67 0.763542
Target:  5'- aGGACCUGuuuCGG-CaCCGUcgUGCUGC-GCg -3'
miRNA:   3'- -CCUGGACu--GCCuG-GGCG--ACGGCGaCG- -5'
16023 5' -60.5 NC_004065.1 + 67439 0.67 0.763542
Target:  5'- cGACCcgcacacGACGGACCUGUcgGCCGaggcgGCg -3'
miRNA:   3'- cCUGGa------CUGCCUGGGCGa-CGGCga---CG- -5'
16023 5' -60.5 NC_004065.1 + 197553 0.67 0.762652
Target:  5'- gGGACaCUGGCGcgccgacGACCUgguggGCaUGCgGCUGCg -3'
miRNA:   3'- -CCUG-GACUGC-------CUGGG-----CG-ACGgCGACG- -5'
16023 5' -60.5 NC_004065.1 + 106746 0.67 0.754596
Target:  5'- cGGCgaGACGGACCUGCaGUacauCUGCg -3'
miRNA:   3'- cCUGgaCUGCCUGGGCGaCGgc--GACG- -5'
16023 5' -60.5 NC_004065.1 + 68247 0.67 0.754596
Target:  5'- uGACgagGACGGACCgGCUGCUG--GCg -3'
miRNA:   3'- cCUGga-CUGCCUGGgCGACGGCgaCG- -5'
16023 5' -60.5 NC_004065.1 + 157086 0.67 0.754596
Target:  5'- uGACCguuaGGUGGACCCGaCUcGCCGCcggggGCg -3'
miRNA:   3'- cCUGGa---CUGCCUGGGC-GA-CGGCGa----CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.