Results 61 - 80 of 162 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
16023 | 5' | -60.5 | NC_004065.1 | + | 105980 | 0.67 | 0.754596 |
Target: 5'- cGGACaCguucgaGACGGACaCGCUGCUGUacaGCa -3' miRNA: 3'- -CCUG-Ga-----CUGCCUGgGCGACGGCGa--CG- -5' |
|||||||
16023 | 5' | -60.5 | NC_004065.1 | + | 108639 | 0.67 | 0.754596 |
Target: 5'- uGGugCUGAuCGuGuuCUGCgUGCCGCUGg -3' miRNA: 3'- -CCugGACU-GC-CugGGCG-ACGGCGACg -5' |
|||||||
16023 | 5' | -60.5 | NC_004065.1 | + | 77141 | 0.67 | 0.754596 |
Target: 5'- -uGCCUGcgGCGcGACCCGCaGCagaaaugGCUGCu -3' miRNA: 3'- ccUGGAC--UGC-CUGGGCGaCGg------CGACG- -5' |
|||||||
16023 | 5' | -60.5 | NC_004065.1 | + | 68247 | 0.67 | 0.754596 |
Target: 5'- uGACgagGACGGACCgGCUGCUG--GCg -3' miRNA: 3'- cCUGga-CUGCCUGGgCGACGGCgaCG- -5' |
|||||||
16023 | 5' | -60.5 | NC_004065.1 | + | 61447 | 0.68 | 0.745556 |
Target: 5'- aGGGCC-GGCccGACCCGCU-CCGUgaUGCg -3' miRNA: 3'- -CCUGGaCUGc-CUGGGCGAcGGCG--ACG- -5' |
|||||||
16023 | 5' | -60.5 | NC_004065.1 | + | 80299 | 0.68 | 0.745556 |
Target: 5'- uGGACCgcuaUGAguccgaGGGCCgGCgcgGCCGCgGCc -3' miRNA: 3'- -CCUGG----ACUg-----CCUGGgCGa--CGGCGaCG- -5' |
|||||||
16023 | 5' | -60.5 | NC_004065.1 | + | 5216 | 0.68 | 0.745556 |
Target: 5'- cGGACa-GACGGcggucgugACCgUGCUGCCGCccGCu -3' miRNA: 3'- -CCUGgaCUGCC--------UGG-GCGACGGCGa-CG- -5' |
|||||||
16023 | 5' | -60.5 | NC_004065.1 | + | 130358 | 0.68 | 0.745556 |
Target: 5'- cGGACgCUGuCGG-CgCCGC-GCCGCcgGCu -3' miRNA: 3'- -CCUG-GACuGCCuG-GGCGaCGGCGa-CG- -5' |
|||||||
16023 | 5' | -60.5 | NC_004065.1 | + | 97670 | 0.68 | 0.744647 |
Target: 5'- cGAUCUGGCgcaGGAUgugauacucgcggUCGCUGCCGCcGCc -3' miRNA: 3'- cCUGGACUG---CCUG-------------GGCGACGGCGaCG- -5' |
|||||||
16023 | 5' | -60.5 | NC_004065.1 | + | 226455 | 0.68 | 0.736428 |
Target: 5'- cGAUCgaGAcCGGGCUCGCcuucugccagcGCCGCUGCg -3' miRNA: 3'- cCUGGa-CU-GCCUGGGCGa----------CGGCGACG- -5' |
|||||||
16023 | 5' | -60.5 | NC_004065.1 | + | 4426 | 0.68 | 0.736428 |
Target: 5'- cGGGCCUGACGcuGACCCucgggccucgaGCUcGUCGCggGUc -3' miRNA: 3'- -CCUGGACUGC--CUGGG-----------CGA-CGGCGa-CG- -5' |
|||||||
16023 | 5' | -60.5 | NC_004065.1 | + | 78535 | 0.68 | 0.727221 |
Target: 5'- ---gCUGA-GGAgCCCGUccgcgUGCCGCUGCu -3' miRNA: 3'- ccugGACUgCCU-GGGCG-----ACGGCGACG- -5' |
|||||||
16023 | 5' | -60.5 | NC_004065.1 | + | 201336 | 0.68 | 0.727221 |
Target: 5'- gGGugCUGcuucuGCGuGA-CUGCUGuuGCUGCg -3' miRNA: 3'- -CCugGAC-----UGC-CUgGGCGACggCGACG- -5' |
|||||||
16023 | 5' | -60.5 | NC_004065.1 | + | 68184 | 0.68 | 0.727221 |
Target: 5'- cGGAgCUGuCGG-CCC-C-GCCGCUGUa -3' miRNA: 3'- -CCUgGACuGCCuGGGcGaCGGCGACG- -5' |
|||||||
16023 | 5' | -60.5 | NC_004065.1 | + | 105375 | 0.68 | 0.727221 |
Target: 5'- cGGACC---CGGACUCGCUGaCgGCcgGCg -3' miRNA: 3'- -CCUGGacuGCCUGGGCGAC-GgCGa-CG- -5' |
|||||||
16023 | 5' | -60.5 | NC_004065.1 | + | 162152 | 0.68 | 0.727221 |
Target: 5'- gGGcaACCUGAuCGGccGCCgGCUGCgGCgcaGCg -3' miRNA: 3'- -CC--UGGACU-GCC--UGGgCGACGgCGa--CG- -5' |
|||||||
16023 | 5' | -60.5 | NC_004065.1 | + | 205462 | 0.68 | 0.723517 |
Target: 5'- cGGACCgcgcgaucccgacGAgGGGCUCGUcuCCGCUGCc -3' miRNA: 3'- -CCUGGa------------CUgCCUGGGCGacGGCGACG- -5' |
|||||||
16023 | 5' | -60.5 | NC_004065.1 | + | 7167 | 0.68 | 0.708597 |
Target: 5'- cGGGgaUGGCGGACgCGCUGUCaaugacgaccgaGCUGUg -3' miRNA: 3'- -CCUggACUGCCUGgGCGACGG------------CGACG- -5' |
|||||||
16023 | 5' | -60.5 | NC_004065.1 | + | 117150 | 0.68 | 0.708597 |
Target: 5'- cGGGCCUGGCccugagucugccGGACgaGCUGCUGUccgacgGCa -3' miRNA: 3'- -CCUGGACUG------------CCUGggCGACGGCGa-----CG- -5' |
|||||||
16023 | 5' | -60.5 | NC_004065.1 | + | 119636 | 0.68 | 0.704843 |
Target: 5'- cGGCCgUGGCGuguucgaacGGCCUGCgcgagaggucccaGCCGCUGCg -3' miRNA: 3'- cCUGG-ACUGC---------CUGGGCGa------------CGGCGACG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home