miRNA display CGI


Results 81 - 100 of 162 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16023 5' -60.5 NC_004065.1 + 54633 0.68 0.699196
Target:  5'- aGGACg-GugGGggaucgucguccGCCUGCUGCCGCa-- -3'
miRNA:   3'- -CCUGgaCugCC------------UGGGCGACGGCGacg -5'
16023 5' -60.5 NC_004065.1 + 69392 0.68 0.699196
Target:  5'- cGGCgCUGGCGGAacaGCUGCCGaCgggGCg -3'
miRNA:   3'- cCUG-GACUGCCUgggCGACGGC-Ga--CG- -5'
16023 5' -60.5 NC_004065.1 + 104704 0.69 0.693531
Target:  5'- aGGugCUG-CGGGCCuCGCUGacggaccaccaguacCCGgaGCu -3'
miRNA:   3'- -CCugGACuGCCUGG-GCGAC---------------GGCgaCG- -5'
16023 5' -60.5 NC_004065.1 + 106636 0.69 0.689745
Target:  5'- uGACC-GAUGGACCCGUauaGUCGCgccUGCc -3'
miRNA:   3'- cCUGGaCUGCCUGGGCGa--CGGCG---ACG- -5'
16023 5' -60.5 NC_004065.1 + 108704 0.69 0.689745
Target:  5'- aGACUaGACGaGCCCcgaguGCgggGCCGCUGCc -3'
miRNA:   3'- cCUGGaCUGCcUGGG-----CGa--CGGCGACG- -5'
16023 5' -60.5 NC_004065.1 + 17956 0.69 0.689745
Target:  5'- aGGucGCCgGACGGucgUCCGuCUGCCGC-GCg -3'
miRNA:   3'- -CC--UGGaCUGCCu--GGGC-GACGGCGaCG- -5'
16023 5' -60.5 NC_004065.1 + 112848 0.69 0.688798
Target:  5'- -cGCCUGccccagggGCGGACCCcgucggcGCUGUCGgUGCc -3'
miRNA:   3'- ccUGGAC--------UGCCUGGG-------CGACGGCgACG- -5'
16023 5' -60.5 NC_004065.1 + 189850 0.69 0.680252
Target:  5'- gGGACCUgcucgucgccgcGAgGGGuuUGCUGCCGUcgGCa -3'
miRNA:   3'- -CCUGGA------------CUgCCUggGCGACGGCGa-CG- -5'
16023 5' -60.5 NC_004065.1 + 224047 0.69 0.680252
Target:  5'- aGGGCCaUGACGG-CCgGUgGCCGCg-- -3'
miRNA:   3'- -CCUGG-ACUGCCuGGgCGaCGGCGacg -5'
16023 5' -60.5 NC_004065.1 + 200007 0.69 0.680252
Target:  5'- -aGCUUGACGGGCaCCGCgGUCGUcagggGCa -3'
miRNA:   3'- ccUGGACUGCCUG-GGCGaCGGCGa----CG- -5'
16023 5' -60.5 NC_004065.1 + 130300 0.69 0.680252
Target:  5'- gGGAUCUacagccacgGGCGcucGAUCCGCaUGCCGCUGa -3'
miRNA:   3'- -CCUGGA---------CUGC---CUGGGCG-ACGGCGACg -5'
16023 5' -60.5 NC_004065.1 + 80074 0.69 0.671679
Target:  5'- aGGACCUGACGccgucuguggaucaaGCCCGCcuccUGCCGagccGCg -3'
miRNA:   3'- -CCUGGACUGCc--------------UGGGCG----ACGGCga--CG- -5'
16023 5' -60.5 NC_004065.1 + 66143 0.69 0.670725
Target:  5'- uGGGCC--GCGGACCgGC-GCCaGCUGg -3'
miRNA:   3'- -CCUGGacUGCCUGGgCGaCGG-CGACg -5'
16023 5' -60.5 NC_004065.1 + 202625 0.69 0.670725
Target:  5'- aGGAgUcGACGacGAUgccgCCGCUGCUGCUGCu -3'
miRNA:   3'- -CCUgGaCUGC--CUG----GGCGACGGCGACG- -5'
16023 5' -60.5 NC_004065.1 + 103437 0.69 0.670725
Target:  5'- cGGCCUGAUcGAcaccuuCCUGCgcgUGCUGCUGCg -3'
miRNA:   3'- cCUGGACUGcCU------GGGCG---ACGGCGACG- -5'
16023 5' -60.5 NC_004065.1 + 78345 0.69 0.66117
Target:  5'- aGGGCgccgcgcgCUGGCGGuagaGCUCGCUGUCGUUGa -3'
miRNA:   3'- -CCUG--------GACUGCC----UGGGCGACGGCGACg -5'
16023 5' -60.5 NC_004065.1 + 116584 0.69 0.66117
Target:  5'- gGGGCaC-GGCGGGCCCcccgGCcGCCGCUcuGCg -3'
miRNA:   3'- -CCUG-GaCUGCCUGGG----CGaCGGCGA--CG- -5'
16023 5' -60.5 NC_004065.1 + 108673 0.69 0.66117
Target:  5'- cGugCgGAUGGACCUGCUG-UGCgUGCa -3'
miRNA:   3'- cCugGaCUGCCUGGGCGACgGCG-ACG- -5'
16023 5' -60.5 NC_004065.1 + 228768 0.69 0.66117
Target:  5'- uGGACCucaUGACGGACgCGggaaccGCCGgaGCa -3'
miRNA:   3'- -CCUGG---ACUGCCUGgGCga----CGGCgaCG- -5'
16023 5' -60.5 NC_004065.1 + 61056 0.69 0.66117
Target:  5'- -cGCgCUGACGGACaCCGagagGCCGUUGg -3'
miRNA:   3'- ccUG-GACUGCCUG-GGCga--CGGCGACg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.