miRNA display CGI


Results 1 - 20 of 162 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16023 5' -60.5 NC_004065.1 + 472 0.67 0.772385
Target:  5'- -cGCCUGAgucagccucCGGGCCgCGC-GCCGCguccGCg -3'
miRNA:   3'- ccUGGACU---------GCCUGG-GCGaCGGCGa---CG- -5'
16023 5' -60.5 NC_004065.1 + 4426 0.68 0.736428
Target:  5'- cGGGCCUGACGcuGACCCucgggccucgaGCUcGUCGCggGUc -3'
miRNA:   3'- -CCUGGACUGC--CUGGG-----------CGA-CGGCGa-CG- -5'
16023 5' -60.5 NC_004065.1 + 5216 0.68 0.745556
Target:  5'- cGGACa-GACGGcggucgugACCgUGCUGCCGCccGCu -3'
miRNA:   3'- -CCUGgaCUGCC--------UGG-GCGACGGCGa-CG- -5'
16023 5' -60.5 NC_004065.1 + 6080 0.73 0.437649
Target:  5'- uGACCcugccgcUGACGaGACCCggucuccuccuggGCUGCCGCUGg -3'
miRNA:   3'- cCUGG-------ACUGC-CUGGG-------------CGACGGCGACg -5'
16023 5' -60.5 NC_004065.1 + 6173 0.67 0.789733
Target:  5'- cGGGCCgGGCGG-CCgaguacgaGUUGUCGCUcGCg -3'
miRNA:   3'- -CCUGGaCUGCCuGGg-------CGACGGCGA-CG- -5'
16023 5' -60.5 NC_004065.1 + 7167 0.68 0.708597
Target:  5'- cGGGgaUGGCGGACgCGCUGUCaaugacgaccgaGCUGUg -3'
miRNA:   3'- -CCUggACUGCCUGgGCGACGG------------CGACG- -5'
16023 5' -60.5 NC_004065.1 + 10448 0.67 0.781117
Target:  5'- gGGACCaUGACGGAUCUGUccaaGUuaacagauCGCUGUg -3'
miRNA:   3'- -CCUGG-ACUGCCUGGGCGa---CG--------GCGACG- -5'
16023 5' -60.5 NC_004065.1 + 17956 0.69 0.689745
Target:  5'- aGGucGCCgGACGGucgUCCGuCUGCCGC-GCg -3'
miRNA:   3'- -CC--UGGaCUGCCu--GGGC-GACGGCGaCG- -5'
16023 5' -60.5 NC_004065.1 + 19507 0.71 0.55615
Target:  5'- gGGAC--GGCGGAaCCGCUGCCGaacgGCg -3'
miRNA:   3'- -CCUGgaCUGCCUgGGCGACGGCga--CG- -5'
16023 5' -60.5 NC_004065.1 + 23263 0.7 0.622812
Target:  5'- gGGACCgacGCGGuacgacuggcGCCCGUaGCCGCgGCc -3'
miRNA:   3'- -CCUGGac-UGCC----------UGGGCGaCGGCGaCG- -5'
16023 5' -60.5 NC_004065.1 + 27707 0.67 0.798223
Target:  5'- gGGAUCgGGCGucuGGCCCGUgcucGCgCGCUGUc -3'
miRNA:   3'- -CCUGGaCUGC---CUGGGCGa---CG-GCGACG- -5'
16023 5' -60.5 NC_004065.1 + 28337 0.66 0.813168
Target:  5'- aGGGCCUGucCGcGuugugccgccgcaGCCuCGCUuucgcgcGCCGCUGCu -3'
miRNA:   3'- -CCUGGACu-GC-C-------------UGG-GCGA-------CGGCGACG- -5'
16023 5' -60.5 NC_004065.1 + 28526 0.7 0.594085
Target:  5'- -uGCCUGACGaGaguagcGCCCGCcGCaUGCUGCg -3'
miRNA:   3'- ccUGGACUGC-C------UGGGCGaCG-GCGACG- -5'
16023 5' -60.5 NC_004065.1 + 30975 0.71 0.565578
Target:  5'- aGACgaGugGGAUgCGCUcGCCGCgucggGCg -3'
miRNA:   3'- cCUGgaCugCCUGgGCGA-CGGCGa----CG- -5'
16023 5' -60.5 NC_004065.1 + 31489 0.67 0.772385
Target:  5'- cGGACCUGguGCGGcugagguacaucGCCuCGUgcgacgUGCCGCgggGCu -3'
miRNA:   3'- -CCUGGAC--UGCC------------UGG-GCG------ACGGCGa--CG- -5'
16023 5' -60.5 NC_004065.1 + 31906 0.73 0.465138
Target:  5'- cGGGCCUGACGcGGCgCGUcGCCGaCaGCg -3'
miRNA:   3'- -CCUGGACUGC-CUGgGCGaCGGC-GaCG- -5'
16023 5' -60.5 NC_004065.1 + 32202 0.67 0.788877
Target:  5'- gGGACCUGGacGACCCcaacgugGC-GCCGCggGCg -3'
miRNA:   3'- -CCUGGACUgcCUGGG-------CGaCGGCGa-CG- -5'
16023 5' -60.5 NC_004065.1 + 32247 0.66 0.841616
Target:  5'- cGGACUcgccgccaucaucgGACGGcuccgaguGCCCGCUGuCCGCg-- -3'
miRNA:   3'- -CCUGGa-------------CUGCC--------UGGGCGAC-GGCGacg -5'
16023 5' -60.5 NC_004065.1 + 33588 0.66 0.822874
Target:  5'- -cGCgUGGCGGACggcaucaCGaUGCUGCUGCg -3'
miRNA:   3'- ccUGgACUGCCUGg------GCgACGGCGACG- -5'
16023 5' -60.5 NC_004065.1 + 33659 0.66 0.806581
Target:  5'- cGACCgucCGG-CgCGCggggaggGCCGCUGCg -3'
miRNA:   3'- cCUGGacuGCCuGgGCGa------CGGCGACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.