miRNA display CGI


Results 21 - 40 of 162 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16023 5' -60.5 NC_004065.1 + 34898 0.7 0.632408
Target:  5'- uGGCCUGGCGGaaaguagacaGCCCGgUGCgG-UGCg -3'
miRNA:   3'- cCUGGACUGCC----------UGGGCgACGgCgACG- -5'
16023 5' -60.5 NC_004065.1 + 35948 0.76 0.310206
Target:  5'- cGGCCgcagGucguCGGACUCGC-GCCGCUGCu -3'
miRNA:   3'- cCUGGa---Cu---GCCUGGGCGaCGGCGACG- -5'
16023 5' -60.5 NC_004065.1 + 36112 0.67 0.781117
Target:  5'- cGGCa--ACGGGgCCGCUGCCgGCgGCg -3'
miRNA:   3'- cCUGgacUGCCUgGGCGACGG-CGaCG- -5'
16023 5' -60.5 NC_004065.1 + 39795 0.69 0.651594
Target:  5'- aGGACCcGGCGGG-CCGCUcGUCacugucacaguGCUGCa -3'
miRNA:   3'- -CCUGGaCUGCCUgGGCGA-CGG-----------CGACG- -5'
16023 5' -60.5 NC_004065.1 + 41154 0.66 0.822874
Target:  5'- uGGuACCUGAgccagaGGACCaucuCGUUGUagaGCUGCg -3'
miRNA:   3'- -CC-UGGACUg-----CCUGG----GCGACGg--CGACG- -5'
16023 5' -60.5 NC_004065.1 + 42670 0.67 0.798223
Target:  5'- gGGACgCUGACGcGAa--GCUGCUcgcguucggaGCUGCa -3'
miRNA:   3'- -CCUG-GACUGC-CUgggCGACGG----------CGACG- -5'
16023 5' -60.5 NC_004065.1 + 48466 0.71 0.575046
Target:  5'- aGGAggUGACGGugCCGUaGUCGCcGCg -3'
miRNA:   3'- -CCUggACUGCCugGGCGaCGGCGaCG- -5'
16023 5' -60.5 NC_004065.1 + 49658 0.66 0.846154
Target:  5'- uGGACCaguuucccgUGGCGGugCCGCcGgaGCagGCg -3'
miRNA:   3'- -CCUGG---------ACUGCCugGGCGaCggCGa-CG- -5'
16023 5' -60.5 NC_004065.1 + 54633 0.68 0.699196
Target:  5'- aGGACg-GugGGggaucgucguccGCCUGCUGCCGCa-- -3'
miRNA:   3'- -CCUGgaCugCC------------UGGGCGACGGCGacg -5'
16023 5' -60.5 NC_004065.1 + 60427 0.72 0.509796
Target:  5'- cGACgUGACGGccCCCGCgaaccgGCCGgaGCc -3'
miRNA:   3'- cCUGgACUGCCu-GGGCGa-----CGGCgaCG- -5'
16023 5' -60.5 NC_004065.1 + 60455 0.7 0.594085
Target:  5'- aGGACCacgucGACGGAgcuCUCGaCUGCCGC-GCc -3'
miRNA:   3'- -CCUGGa----CUGCCU---GGGC-GACGGCGaCG- -5'
16023 5' -60.5 NC_004065.1 + 61056 0.69 0.66117
Target:  5'- -cGCgCUGACGGACaCCGagagGCCGUUGg -3'
miRNA:   3'- ccUG-GACUGCCUG-GGCga--CGGCGACg -5'
16023 5' -60.5 NC_004065.1 + 61447 0.68 0.745556
Target:  5'- aGGGCC-GGCccGACCCGCU-CCGUgaUGCg -3'
miRNA:   3'- -CCUGGaCUGc-CUGGGCGAcGGCG--ACG- -5'
16023 5' -60.5 NC_004065.1 + 61454 0.73 0.44785
Target:  5'- cGGGCCgaGAC--GCCCGCUGUCGCcGCc -3'
miRNA:   3'- -CCUGGa-CUGccUGGGCGACGGCGaCG- -5'
16023 5' -60.5 NC_004065.1 + 61823 0.66 0.828435
Target:  5'- cGGACUcGACGGcgucgucaaacaagGCgUCGC-GCCGCUGUc -3'
miRNA:   3'- -CCUGGaCUGCC--------------UG-GGCGaCGGCGACG- -5'
16023 5' -60.5 NC_004065.1 + 63060 0.69 0.642005
Target:  5'- cGAUCc--CGGACCUGCUGUCGC-GCg -3'
miRNA:   3'- cCUGGacuGCCUGGGCGACGGCGaCG- -5'
16023 5' -60.5 NC_004065.1 + 63866 0.75 0.352275
Target:  5'- cGGugCaGACGucGGCgCCGCUGCCGCcgGCg -3'
miRNA:   3'- -CCugGaCUGC--CUG-GGCGACGGCGa-CG- -5'
16023 5' -60.5 NC_004065.1 + 65371 0.66 0.846154
Target:  5'- cGACCUGGgcgacgcgcgcCGcGACCCGaCUGUUccuccgagGCUGCg -3'
miRNA:   3'- cCUGGACU-----------GC-CUGGGC-GACGG--------CGACG- -5'
16023 5' -60.5 NC_004065.1 + 65638 1.12 0.001258
Target:  5'- aGGACCUGACGGACCCGCUGCCGCUGCc -3'
miRNA:   3'- -CCUGGACUGCCUGGGCGACGGCGACG- -5'
16023 5' -60.5 NC_004065.1 + 66143 0.69 0.670725
Target:  5'- uGGGCC--GCGGACCgGC-GCCaGCUGg -3'
miRNA:   3'- -CCUGGacUGCCUGGgCGaCGG-CGACg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.