miRNA display CGI


Results 41 - 60 of 162 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16023 5' -60.5 NC_004065.1 + 66368 0.7 0.594085
Target:  5'- aGGCCgcuGCuGcCuCCGCUGCCGCUGCc -3'
miRNA:   3'- cCUGGac-UGcCuG-GGCGACGGCGACG- -5'
16023 5' -60.5 NC_004065.1 + 66603 0.73 0.45645
Target:  5'- uGGACgCgGACaGGAUCCGgaGCCGCggGCu -3'
miRNA:   3'- -CCUG-GaCUG-CCUGGGCgaCGGCGa-CG- -5'
16023 5' -60.5 NC_004065.1 + 66641 0.71 0.575046
Target:  5'- -uGCgUGGCGGACgCGCUGaCGCUGa -3'
miRNA:   3'- ccUGgACUGCCUGgGCGACgGCGACg -5'
16023 5' -60.5 NC_004065.1 + 66924 0.7 0.594085
Target:  5'- aGACCUGACGaACCCGCUacGCCug-GCc -3'
miRNA:   3'- cCUGGACUGCcUGGGCGA--CGGcgaCG- -5'
16023 5' -60.5 NC_004065.1 + 67330 0.7 0.632408
Target:  5'- uGGAcuuCCUGACguacgcgagagGGAagCCGCUGCCGgUGUa -3'
miRNA:   3'- -CCU---GGACUG-----------CCUg-GGCGACGGCgACG- -5'
16023 5' -60.5 NC_004065.1 + 67439 0.67 0.763542
Target:  5'- cGACCcgcacacGACGGACCUGUcgGCCGaggcgGCg -3'
miRNA:   3'- cCUGGa------CUGCCUGGGCGa-CGGCga---CG- -5'
16023 5' -60.5 NC_004065.1 + 67807 0.66 0.822874
Target:  5'- cGGGCaagaagaGACGGGCgCCGgacgUGCCGCcGCa -3'
miRNA:   3'- -CCUGga-----CUGCCUG-GGCg---ACGGCGaCG- -5'
16023 5' -60.5 NC_004065.1 + 68184 0.68 0.727221
Target:  5'- cGGAgCUGuCGG-CCC-C-GCCGCUGUa -3'
miRNA:   3'- -CCUgGACuGCCuGGGcGaCGGCGACG- -5'
16023 5' -60.5 NC_004065.1 + 68247 0.67 0.754596
Target:  5'- uGACgagGACGGACCgGCUGCUG--GCg -3'
miRNA:   3'- cCUGga-CUGCCUGGgCGACGGCgaCG- -5'
16023 5' -60.5 NC_004065.1 + 68310 0.71 0.537437
Target:  5'- cGGACUUcgaGACGGugUCGUcGUgGCUGCg -3'
miRNA:   3'- -CCUGGA---CUGCCugGGCGaCGgCGACG- -5'
16023 5' -60.5 NC_004065.1 + 68568 0.66 0.806581
Target:  5'- uGGGCCUGGCGaGCaaCGCgGCgGCgGCg -3'
miRNA:   3'- -CCUGGACUGCcUGg-GCGaCGgCGaCG- -5'
16023 5' -60.5 NC_004065.1 + 68736 0.7 0.622812
Target:  5'- --uCCUGACGGGgUCGCUGCCGg--- -3'
miRNA:   3'- ccuGGACUGCCUgGGCGACGGCgacg -5'
16023 5' -60.5 NC_004065.1 + 68867 0.66 0.814801
Target:  5'- uGACCga--GGACCUGCUGUacCUGCa -3'
miRNA:   3'- cCUGGacugCCUGGGCGACGgcGACG- -5'
16023 5' -60.5 NC_004065.1 + 69392 0.68 0.699196
Target:  5'- cGGCgCUGGCGGAacaGCUGCCGaCgggGCg -3'
miRNA:   3'- cCUG-GACUGCCUgggCGACGGC-Ga--CG- -5'
16023 5' -60.5 NC_004065.1 + 69443 0.7 0.636247
Target:  5'- uGGACUcGACGGACaucgugucgcagaugUCGC-GCCgGCUGCg -3'
miRNA:   3'- -CCUGGaCUGCCUG---------------GGCGaCGG-CGACG- -5'
16023 5' -60.5 NC_004065.1 + 77141 0.67 0.754596
Target:  5'- -uGCCUGcgGCGcGACCCGCaGCagaaaugGCUGCu -3'
miRNA:   3'- ccUGGAC--UGC-CUGGGCGaCGg------CGACG- -5'
16023 5' -60.5 NC_004065.1 + 77505 0.72 0.509796
Target:  5'- cGGcGCC-GGCGGAgCCCgaggaGCUGCgGCUGCu -3'
miRNA:   3'- -CC-UGGaCUGCCU-GGG-----CGACGgCGACG- -5'
16023 5' -60.5 NC_004065.1 + 78082 0.77 0.260226
Target:  5'- -cACCUGuucGCGGACCCGCUGUgCGCgGCu -3'
miRNA:   3'- ccUGGAC---UGCCUGGGCGACG-GCGaCG- -5'
16023 5' -60.5 NC_004065.1 + 78345 0.69 0.66117
Target:  5'- aGGGCgccgcgcgCUGGCGGuagaGCUCGCUGUCGUUGa -3'
miRNA:   3'- -CCUG--------GACUGCC----UGGGCGACGGCGACg -5'
16023 5' -60.5 NC_004065.1 + 78535 0.68 0.727221
Target:  5'- ---gCUGA-GGAgCCCGUccgcgUGCCGCUGCu -3'
miRNA:   3'- ccugGACUgCCU-GGGCG-----ACGGCGACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.