miRNA display CGI


Results 61 - 80 of 162 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16023 5' -60.5 NC_004065.1 + 78693 0.74 0.414378
Target:  5'- uGAUCUGAgCGGAUCUGCUGCgGUUGa -3'
miRNA:   3'- cCUGGACU-GCCUGGGCGACGgCGACg -5'
16023 5' -60.5 NC_004065.1 + 79607 0.79 0.212061
Target:  5'- uGGACa-GGcCGGACCCGCUGCgcgcgcggaCGCUGCg -3'
miRNA:   3'- -CCUGgaCU-GCCUGGGCGACG---------GCGACG- -5'
16023 5' -60.5 NC_004065.1 + 80074 0.69 0.671679
Target:  5'- aGGACCUGACGccgucuguggaucaaGCCCGCcuccUGCCGagccGCg -3'
miRNA:   3'- -CCUGGACUGCc--------------UGGGCG----ACGGCga--CG- -5'
16023 5' -60.5 NC_004065.1 + 80299 0.68 0.745556
Target:  5'- uGGACCgcuaUGAguccgaGGGCCgGCgcgGCCGCgGCc -3'
miRNA:   3'- -CCUGG----ACUg-----CCUGGgCGa--CGGCGaCG- -5'
16023 5' -60.5 NC_004065.1 + 86260 0.66 0.846154
Target:  5'- gGGACCguUGAUGaaacgguaGAUCUGCUGCCcgaGCUGg -3'
miRNA:   3'- -CCUGG--ACUGC--------CUGGGCGACGG---CGACg -5'
16023 5' -60.5 NC_004065.1 + 88419 0.67 0.789733
Target:  5'- -cGCCggcaGCGGAgCCCGCcGCCGUcGCg -3'
miRNA:   3'- ccUGGac--UGCCU-GGGCGaCGGCGaCG- -5'
16023 5' -60.5 NC_004065.1 + 89148 0.66 0.814801
Target:  5'- aGGGuCUcguUGAUGGACUCGCUGgCgGCgGCc -3'
miRNA:   3'- -CCU-GG---ACUGCCUGGGCGAC-GgCGaCG- -5'
16023 5' -60.5 NC_004065.1 + 89827 0.72 0.482768
Target:  5'- cGACCUGcuggUGGugCUGCuacUGCCGCUGUu -3'
miRNA:   3'- cCUGGACu---GCCugGGCG---ACGGCGACG- -5'
16023 5' -60.5 NC_004065.1 + 90958 0.7 0.632408
Target:  5'- cGGGCCaGACGGGCaCGCUGCgGUc-- -3'
miRNA:   3'- -CCUGGaCUGCCUGgGCGACGgCGacg -5'
16023 5' -60.5 NC_004065.1 + 94946 0.7 0.613222
Target:  5'- cGACuaCUGGCgcugcgGGGCCCGCUccGCgGCUGCc -3'
miRNA:   3'- cCUG--GACUG------CCUGGGCGA--CGgCGACG- -5'
16023 5' -60.5 NC_004065.1 + 97001 0.67 0.798223
Target:  5'- -uGCUgcGACG--UCUGCUGCCGCUGCu -3'
miRNA:   3'- ccUGGa-CUGCcuGGGCGACGGCGACG- -5'
16023 5' -60.5 NC_004065.1 + 97670 0.68 0.744647
Target:  5'- cGAUCUGGCgcaGGAUgugauacucgcggUCGCUGCCGCcGCc -3'
miRNA:   3'- cCUGGACUG---CCUG-------------GGCGACGGCGaCG- -5'
16023 5' -60.5 NC_004065.1 + 99143 0.71 0.525391
Target:  5'- cGGCCgacGGCGGuaaacaccguggccGCCUccaGCUGCUGCUGCa -3'
miRNA:   3'- cCUGGa--CUGCC--------------UGGG---CGACGGCGACG- -5'
16023 5' -60.5 NC_004065.1 + 99379 0.67 0.772385
Target:  5'- uGGGCaUGACGGGCgUggGCUGCCugGCgGCg -3'
miRNA:   3'- -CCUGgACUGCCUGgG--CGACGG--CGaCG- -5'
16023 5' -60.5 NC_004065.1 + 99942 0.75 0.352275
Target:  5'- cGGACCgccGCGGcGgCgGCUGCUGCUGCg -3'
miRNA:   3'- -CCUGGac-UGCC-UgGgCGACGGCGACG- -5'
16023 5' -60.5 NC_004065.1 + 101253 0.77 0.284349
Target:  5'- -cGCCggcGACGGcGCCCucaacGCUGCCGCUGCc -3'
miRNA:   3'- ccUGGa--CUGCC-UGGG-----CGACGGCGACG- -5'
16023 5' -60.5 NC_004065.1 + 101426 0.69 0.655426
Target:  5'- gGGGCggCUGGCGcGugcggaugcgccuucGCCgccgacguCGCUGCCGCUGCg -3'
miRNA:   3'- -CCUG--GACUGC-C---------------UGG--------GCGACGGCGACG- -5'
16023 5' -60.5 NC_004065.1 + 101605 0.74 0.390307
Target:  5'- aGACUcggUGGCGG-CgCCGCcGCCGCUGCc -3'
miRNA:   3'- cCUGG---ACUGCCuG-GGCGaCGGCGACG- -5'
16023 5' -60.5 NC_004065.1 + 102928 0.66 0.846154
Target:  5'- uGGACggcGACGGAgCUGCUGCCuaaGCUc- -3'
miRNA:   3'- -CCUGga-CUGCCUgGGCGACGG---CGAcg -5'
16023 5' -60.5 NC_004065.1 + 103437 0.69 0.670725
Target:  5'- cGGCCUGAUcGAcaccuuCCUGCgcgUGCUGCUGCg -3'
miRNA:   3'- cCUGGACUGcCU------GGGCG---ACGGCGACG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.