miRNA display CGI


Results 1 - 20 of 162 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16023 5' -60.5 NC_004065.1 + 228768 0.69 0.66117
Target:  5'- uGGACCucaUGACGGACgCGggaaccGCCGgaGCa -3'
miRNA:   3'- -CCUGG---ACUGCCUGgGCga----CGGCgaCG- -5'
16023 5' -60.5 NC_004065.1 + 226455 0.68 0.736428
Target:  5'- cGAUCgaGAcCGGGCUCGCcuucugccagcGCCGCUGCg -3'
miRNA:   3'- cCUGGa-CU-GCCUGGGCGa----------CGGCGACG- -5'
16023 5' -60.5 NC_004065.1 + 225398 0.66 0.814801
Target:  5'- uGGCgCUGAUGGugCCGCUcccucucgaaggGUCGUgGCg -3'
miRNA:   3'- cCUG-GACUGCCugGGCGA------------CGGCGaCG- -5'
16023 5' -60.5 NC_004065.1 + 224047 0.69 0.680252
Target:  5'- aGGGCCaUGACGG-CCgGUgGCCGCg-- -3'
miRNA:   3'- -CCUGG-ACUGCCuGGgCGaCGGCGacg -5'
16023 5' -60.5 NC_004065.1 + 223271 0.74 0.414378
Target:  5'- aGGACCacgagGACcGACCCGagUGCCGCcGCg -3'
miRNA:   3'- -CCUGGa----CUGcCUGGGCg-ACGGCGaCG- -5'
16023 5' -60.5 NC_004065.1 + 212233 0.75 0.352275
Target:  5'- gGGAUCgcgccaaacgcGACGGccACCCGCUgucuaaGCCGCUGCa -3'
miRNA:   3'- -CCUGGa----------CUGCC--UGGGCGA------CGGCGACG- -5'
16023 5' -60.5 NC_004065.1 + 207103 0.66 0.814801
Target:  5'- cGACgaGACGGAaCCGCcGaCCGCcGCc -3'
miRNA:   3'- cCUGgaCUGCCUgGGCGaC-GGCGaCG- -5'
16023 5' -60.5 NC_004065.1 + 206306 0.73 0.45645
Target:  5'- cGGACCgGACGGACCgCGaCUGCUuGUcggGCg -3'
miRNA:   3'- -CCUGGaCUGCCUGG-GC-GACGG-CGa--CG- -5'
16023 5' -60.5 NC_004065.1 + 205462 0.68 0.723517
Target:  5'- cGGACCgcgcgaucccgacGAgGGGCUCGUcuCCGCUGCc -3'
miRNA:   3'- -CCUGGa------------CUgCCUGGGCGacGGCGACG- -5'
16023 5' -60.5 NC_004065.1 + 203395 0.67 0.781117
Target:  5'- gGGACgCUG-Cu--CCCGCUGUCGCcGCa -3'
miRNA:   3'- -CCUG-GACuGccuGGGCGACGGCGaCG- -5'
16023 5' -60.5 NC_004065.1 + 202625 0.69 0.670725
Target:  5'- aGGAgUcGACGacGAUgccgCCGCUGCUGCUGCu -3'
miRNA:   3'- -CCUgGaCUGC--CUG----GGCGACGGCGACG- -5'
16023 5' -60.5 NC_004065.1 + 201336 0.68 0.727221
Target:  5'- gGGugCUGcuucuGCGuGA-CUGCUGuuGCUGCg -3'
miRNA:   3'- -CCugGAC-----UGC-CUgGGCGACggCGACG- -5'
16023 5' -60.5 NC_004065.1 + 200439 0.67 0.798223
Target:  5'- aGGACC--GCGGuCaCCGCgGCCGCcGUc -3'
miRNA:   3'- -CCUGGacUGCCuG-GGCGaCGGCGaCG- -5'
16023 5' -60.5 NC_004065.1 + 200007 0.69 0.680252
Target:  5'- -aGCUUGACGGGCaCCGCgGUCGUcagggGCa -3'
miRNA:   3'- ccUGGACUGCCUG-GGCGaCGGCGa----CG- -5'
16023 5' -60.5 NC_004065.1 + 197553 0.67 0.762652
Target:  5'- gGGACaCUGGCGcgccgacGACCUgguggGCaUGCgGCUGCg -3'
miRNA:   3'- -CCUG-GACUGC-------CUGGG-----CG-ACGgCGACG- -5'
16023 5' -60.5 NC_004065.1 + 195783 0.72 0.500713
Target:  5'- uGACCaUGGCGGA-CCGCggGCC-CUGCg -3'
miRNA:   3'- cCUGG-ACUGCCUgGGCGa-CGGcGACG- -5'
16023 5' -60.5 NC_004065.1 + 192340 0.66 0.838557
Target:  5'- gGGACgUGACGGGCuCCuCUGUCaCgaggGCg -3'
miRNA:   3'- -CCUGgACUGCCUG-GGcGACGGcGa---CG- -5'
16023 5' -60.5 NC_004065.1 + 191952 0.67 0.798223
Target:  5'- -aGCCUcACGGGCCUGUUGuCCgGCgGCa -3'
miRNA:   3'- ccUGGAcUGCCUGGGCGAC-GG-CGaCG- -5'
16023 5' -60.5 NC_004065.1 + 190244 0.71 0.55333
Target:  5'- cGGAUCUGAgcacaauccuucccCGGA-CCGa-GCCGCUGCg -3'
miRNA:   3'- -CCUGGACU--------------GCCUgGGCgaCGGCGACG- -5'
16023 5' -60.5 NC_004065.1 + 189850 0.69 0.680252
Target:  5'- gGGACCUgcucgucgccgcGAgGGGuuUGCUGCCGUcgGCa -3'
miRNA:   3'- -CCUGGA------------CUgCCUggGCGACGGCGa-CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.