miRNA display CGI


Results 21 - 40 of 162 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16023 5' -60.5 NC_004065.1 + 188907 0.66 0.838557
Target:  5'- cGGCCcGAC-GACCCGgacacCUGCCGCUc- -3'
miRNA:   3'- cCUGGaCUGcCUGGGC-----GACGGCGAcg -5'
16023 5' -60.5 NC_004065.1 + 178832 0.66 0.822874
Target:  5'- aGGACCUugaugaGugGGAgccUCCGUguggccuguaccUGCUGCUGUc -3'
miRNA:   3'- -CCUGGA------CugCCU---GGGCG------------ACGGCGACG- -5'
16023 5' -60.5 NC_004065.1 + 178510 0.72 0.509796
Target:  5'- aGGcuuCUUGcuAgGGGCCUGCUGCUGCUGUu -3'
miRNA:   3'- -CCu--GGAC--UgCCUGGGCGACGGCGACG- -5'
16023 5' -60.5 NC_004065.1 + 173874 0.66 0.846154
Target:  5'- uGAUC-GAUGcGACUCGCUcGCCgagGCUGCa -3'
miRNA:   3'- cCUGGaCUGC-CUGGGCGA-CGG---CGACG- -5'
16023 5' -60.5 NC_004065.1 + 173380 0.71 0.537437
Target:  5'- cGACggUGAagGGugCCGCgGCCGCUGCc -3'
miRNA:   3'- cCUGg-ACUg-CCugGGCGaCGGCGACG- -5'
16023 5' -60.5 NC_004065.1 + 170446 0.66 0.822874
Target:  5'- aGGACgCcGcCGGAggcgccUUCGCUGCCGCcGCa -3'
miRNA:   3'- -CCUG-GaCuGCCU------GGGCGACGGCGaCG- -5'
16023 5' -60.5 NC_004065.1 + 170076 0.66 0.822073
Target:  5'- -aACCUGGCGGGCaCCacuccggGCUucugGCCGCgccGCg -3'
miRNA:   3'- ccUGGACUGCCUG-GG-------CGA----CGGCGa--CG- -5'
16023 5' -60.5 NC_004065.1 + 167917 0.67 0.781117
Target:  5'- -cGCCUcccGCGagcguaacGACCgcCGCUGCCGCUGCc -3'
miRNA:   3'- ccUGGAc--UGC--------CUGG--GCGACGGCGACG- -5'
16023 5' -60.5 NC_004065.1 + 166894 0.67 0.798223
Target:  5'- uGGCgUUGAUGGGCUCGCUG-CGCgGUa -3'
miRNA:   3'- cCUG-GACUGCCUGGGCGACgGCGaCG- -5'
16023 5' -60.5 NC_004065.1 + 164682 0.71 0.55615
Target:  5'- cGACC-GACccACCCGCaGCUGCUGCc -3'
miRNA:   3'- cCUGGaCUGccUGGGCGaCGGCGACG- -5'
16023 5' -60.5 NC_004065.1 + 162337 0.67 0.781117
Target:  5'- cGGAagaagagaUGGaGGGCCCGCcGCCGCcGCc -3'
miRNA:   3'- -CCUgg------ACUgCCUGGGCGaCGGCGaCG- -5'
16023 5' -60.5 NC_004065.1 + 162152 0.68 0.727221
Target:  5'- gGGcaACCUGAuCGGccGCCgGCUGCgGCgcaGCg -3'
miRNA:   3'- -CC--UGGACU-GCC--UGGgCGACGgCGa--CG- -5'
16023 5' -60.5 NC_004065.1 + 161352 0.66 0.814801
Target:  5'- -cGCCUGGCacGACUCGUacGCCGaCUGCg -3'
miRNA:   3'- ccUGGACUGc-CUGGGCGa-CGGC-GACG- -5'
16023 5' -60.5 NC_004065.1 + 159723 0.66 0.822874
Target:  5'- cGGCCgugugGGgGGugCUGCUgaagGCCGCcGCg -3'
miRNA:   3'- cCUGGa----CUgCCugGGCGA----CGGCGaCG- -5'
16023 5' -60.5 NC_004065.1 + 157086 0.67 0.754596
Target:  5'- uGACCguuaGGUGGACCCGaCUcGCCGCcggggGCg -3'
miRNA:   3'- cCUGGa---CUGCCUGGGC-GA-CGGCGa----CG- -5'
16023 5' -60.5 NC_004065.1 + 155932 0.67 0.763542
Target:  5'- aGGACCUGuuuCGG-CaCCGUcgUGCUGC-GCg -3'
miRNA:   3'- -CCUGGACu--GCCuG-GGCG--ACGGCGaCG- -5'
16023 5' -60.5 NC_004065.1 + 151547 0.67 0.79738
Target:  5'- aGGGCCgcaaGGACaCCGacgaccuCUGCCGCaGCa -3'
miRNA:   3'- -CCUGGacugCCUG-GGC-------GACGGCGaCG- -5'
16023 5' -60.5 NC_004065.1 + 151352 0.67 0.754596
Target:  5'- -cGCUcu-CGGGCgCCGCggcgccgGCCGCUGCg -3'
miRNA:   3'- ccUGGacuGCCUG-GGCGa------CGGCGACG- -5'
16023 5' -60.5 NC_004065.1 + 149178 0.74 0.397432
Target:  5'- uGGCCUGGCGcucguccGAUCCGCUcgcucggcGCUGCUGCu -3'
miRNA:   3'- cCUGGACUGC-------CUGGGCGA--------CGGCGACG- -5'
16023 5' -60.5 NC_004065.1 + 141650 0.73 0.45645
Target:  5'- aGGGCggUGGCGGugCCGCgGCCGCg-- -3'
miRNA:   3'- -CCUGg-ACUGCCugGGCGaCGGCGacg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.