miRNA display CGI


Results 41 - 60 of 162 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16023 5' -60.5 NC_004065.1 + 141605 0.71 0.537437
Target:  5'- cGACggcGGCGGGCuCCGCUGCCgGCggugGCg -3'
miRNA:   3'- cCUGga-CUGCCUG-GGCGACGG-CGa---CG- -5'
16023 5' -60.5 NC_004065.1 + 139777 0.67 0.795689
Target:  5'- aGGugugaCUGACGGugaugcGCUCugucaugaauaaaaGCUGCCGCUGUg -3'
miRNA:   3'- -CCug---GACUGCC------UGGG--------------CGACGGCGACG- -5'
16023 5' -60.5 NC_004065.1 + 139660 0.67 0.798223
Target:  5'- uGugC-GGCGcGugCgGCgGCCGCUGCu -3'
miRNA:   3'- cCugGaCUGC-CugGgCGaCGGCGACG- -5'
16023 5' -60.5 NC_004065.1 + 135729 0.72 0.473912
Target:  5'- gGGAUCUGGUGGAgCUGUUGCUGCUuucGCg -3'
miRNA:   3'- -CCUGGACUGCCUgGGCGACGGCGA---CG- -5'
16023 5' -60.5 NC_004065.1 + 135066 0.66 0.818048
Target:  5'- cGGcaGCCgcgGAgCGGGcCCCGCagcgccaguagucgGCUGCUGCa -3'
miRNA:   3'- -CC--UGGa--CU-GCCU-GGGCGa-------------CGGCGACG- -5'
16023 5' -60.5 NC_004065.1 + 133343 0.66 0.806581
Target:  5'- -aACCUGGCGGugUUGUucuUGCCGgUGa -3'
miRNA:   3'- ccUGGACUGCCugGGCG---ACGGCgACg -5'
16023 5' -60.5 NC_004065.1 + 130613 0.66 0.830795
Target:  5'- -uGCCgcuCGGGCCC-CUGCUGCgaGCg -3'
miRNA:   3'- ccUGGacuGCCUGGGcGACGGCGa-CG- -5'
16023 5' -60.5 NC_004065.1 + 130419 0.66 0.846154
Target:  5'- cGACCguccGGCGGAauuCgUGCUGCagcaGCUGUg -3'
miRNA:   3'- cCUGGa---CUGCCU---GgGCGACGg---CGACG- -5'
16023 5' -60.5 NC_004065.1 + 130358 0.68 0.745556
Target:  5'- cGGACgCUGuCGG-CgCCGC-GCCGCcgGCu -3'
miRNA:   3'- -CCUG-GACuGCCuG-GGCGaCGGCGa-CG- -5'
16023 5' -60.5 NC_004065.1 + 130300 0.69 0.680252
Target:  5'- gGGAUCUacagccacgGGCGcucGAUCCGCaUGCCGCUGa -3'
miRNA:   3'- -CCUGGA---------CUGC---CUGGGCG-ACGGCGACg -5'
16023 5' -60.5 NC_004065.1 + 129913 0.66 0.846154
Target:  5'- gGGGCCUGGCGGcACCUGUUuCC-CgagGUa -3'
miRNA:   3'- -CCUGGACUGCC-UGGGCGAcGGcGa--CG- -5'
16023 5' -60.5 NC_004065.1 + 129693 0.76 0.323792
Target:  5'- cGGACgaguguCUGACGGACgCGgUGUgGCUGCg -3'
miRNA:   3'- -CCUG------GACUGCCUGgGCgACGgCGACG- -5'
16023 5' -60.5 NC_004065.1 + 129627 0.69 0.651594
Target:  5'- cGGA---GAacUGGACCCGCcgGCUGCUGCc -3'
miRNA:   3'- -CCUggaCU--GCCUGGGCGa-CGGCGACG- -5'
16023 5' -60.5 NC_004065.1 + 129408 0.73 0.465138
Target:  5'- cGACgCUGAUGGGgCUGCUGaaGCUGUg -3'
miRNA:   3'- cCUG-GACUGCCUgGGCGACggCGACG- -5'
16023 5' -60.5 NC_004065.1 + 127615 0.72 0.516195
Target:  5'- gGGACC-GGCGcuCUacgugcaccgcucgCGCUGCCGCUGCg -3'
miRNA:   3'- -CCUGGaCUGCcuGG--------------GCGACGGCGACG- -5'
16023 5' -60.5 NC_004065.1 + 127030 0.66 0.822073
Target:  5'- cGGACCUaaagcucgucaagGGCGGGCgCCGCgacuacuaCCGC-GCg -3'
miRNA:   3'- -CCUGGA-------------CUGCCUG-GGCGac------GGCGaCG- -5'
16023 5' -60.5 NC_004065.1 + 126715 0.66 0.846154
Target:  5'- -cGCCUG-CGGcgaccgcugaGCCUGCcGCCGCgGCc -3'
miRNA:   3'- ccUGGACuGCC----------UGGGCGaCGGCGaCG- -5'
16023 5' -60.5 NC_004065.1 + 124461 0.71 0.575046
Target:  5'- -cGCC-GACGG-CgCGCcgUGCCGCUGCg -3'
miRNA:   3'- ccUGGaCUGCCuGgGCG--ACGGCGACG- -5'
16023 5' -60.5 NC_004065.1 + 122233 0.76 0.310206
Target:  5'- cGGGCC-GGCGGGucguuCCUGUcGCCGCUGCu -3'
miRNA:   3'- -CCUGGaCUGCCU-----GGGCGaCGGCGACG- -5'
16023 5' -60.5 NC_004065.1 + 120746 0.7 0.622812
Target:  5'- cGGCgUGACccaGGACaCUGCUGCCGCg-- -3'
miRNA:   3'- cCUGgACUG---CCUG-GGCGACGGCGacg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.