miRNA display CGI


Results 1 - 20 of 162 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16023 5' -60.5 NC_004065.1 + 60455 0.7 0.594085
Target:  5'- aGGACCacgucGACGGAgcuCUCGaCUGCCGC-GCc -3'
miRNA:   3'- -CCUGGa----CUGCCU---GGGC-GACGGCGaCG- -5'
16023 5' -60.5 NC_004065.1 + 68310 0.71 0.537437
Target:  5'- cGGACUUcgaGACGGugUCGUcGUgGCUGCg -3'
miRNA:   3'- -CCUGGA---CUGCCugGGCGaCGgCGACG- -5'
16023 5' -60.5 NC_004065.1 + 19507 0.71 0.55615
Target:  5'- gGGAC--GGCGGAaCCGCUGCCGaacgGCg -3'
miRNA:   3'- -CCUGgaCUGCCUgGGCGACGGCga--CG- -5'
16023 5' -60.5 NC_004065.1 + 164682 0.71 0.55615
Target:  5'- cGACC-GACccACCCGCaGCUGCUGCc -3'
miRNA:   3'- cCUGGaCUGccUGGGCGaCGGCGACG- -5'
16023 5' -60.5 NC_004065.1 + 30975 0.71 0.565578
Target:  5'- aGACgaGugGGAUgCGCUcGCCGCgucggGCg -3'
miRNA:   3'- cCUGgaCugCCUGgGCGA-CGGCGa----CG- -5'
16023 5' -60.5 NC_004065.1 + 48466 0.71 0.575046
Target:  5'- aGGAggUGACGGugCCGUaGUCGCcGCg -3'
miRNA:   3'- -CCUggACUGCCugGGCGaCGGCGaCG- -5'
16023 5' -60.5 NC_004065.1 + 66641 0.71 0.575046
Target:  5'- -uGCgUGGCGGACgCGCUGaCGCUGa -3'
miRNA:   3'- ccUGgACUGCCUGgGCGACgGCGACg -5'
16023 5' -60.5 NC_004065.1 + 124461 0.71 0.575046
Target:  5'- -cGCC-GACGG-CgCGCcgUGCCGCUGCg -3'
miRNA:   3'- ccUGGaCUGCCuGgGCG--ACGGCGACG- -5'
16023 5' -60.5 NC_004065.1 + 28526 0.7 0.594085
Target:  5'- -uGCCUGACGaGaguagcGCCCGCcGCaUGCUGCg -3'
miRNA:   3'- ccUGGACUGC-C------UGGGCGaCG-GCGACG- -5'
16023 5' -60.5 NC_004065.1 + 99143 0.71 0.525391
Target:  5'- cGGCCgacGGCGGuaaacaccguggccGCCUccaGCUGCUGCUGCa -3'
miRNA:   3'- cCUGGa--CUGCC--------------UGGG---CGACGGCGACG- -5'
16023 5' -60.5 NC_004065.1 + 127615 0.72 0.516195
Target:  5'- gGGACC-GGCGcuCUacgugcaccgcucgCGCUGCCGCUGCg -3'
miRNA:   3'- -CCUGGaCUGCcuGG--------------GCGACGGCGACG- -5'
16023 5' -60.5 NC_004065.1 + 77505 0.72 0.509796
Target:  5'- cGGcGCC-GGCGGAgCCCgaggaGCUGCgGCUGCu -3'
miRNA:   3'- -CC-UGGaCUGCCU-GGG-----CGACGgCGACG- -5'
16023 5' -60.5 NC_004065.1 + 78082 0.77 0.260226
Target:  5'- -cACCUGuucGCGGACCCGCUGUgCGCgGCu -3'
miRNA:   3'- ccUGGAC---UGCCUGGGCGACG-GCGaCG- -5'
16023 5' -60.5 NC_004065.1 + 122233 0.76 0.310206
Target:  5'- cGGGCC-GGCGGGucguuCCUGUcGCCGCUGCu -3'
miRNA:   3'- -CCUGGaCUGCCU-----GGGCGaCGGCGACG- -5'
16023 5' -60.5 NC_004065.1 + 35948 0.76 0.310206
Target:  5'- cGGCCgcagGucguCGGACUCGC-GCCGCUGCu -3'
miRNA:   3'- cCUGGa---Cu---GCCUGGGCGaCGGCGACG- -5'
16023 5' -60.5 NC_004065.1 + 149178 0.74 0.397432
Target:  5'- uGGCCUGGCGcucguccGAUCCGCUcgcucggcGCUGCUGCu -3'
miRNA:   3'- cCUGGACUGC-------CUGGGCGA--------CGGCGACG- -5'
16023 5' -60.5 NC_004065.1 + 223271 0.74 0.414378
Target:  5'- aGGACCacgagGACcGACCCGagUGCCGCcGCg -3'
miRNA:   3'- -CCUGGa----CUGcCUGGGCg-ACGGCGaCG- -5'
16023 5' -60.5 NC_004065.1 + 66603 0.73 0.45645
Target:  5'- uGGACgCgGACaGGAUCCGgaGCCGCggGCu -3'
miRNA:   3'- -CCUG-GaCUG-CCUGGGCgaCGGCGa-CG- -5'
16023 5' -60.5 NC_004065.1 + 135729 0.72 0.473912
Target:  5'- gGGAUCUGGUGGAgCUGUUGCUGCUuucGCg -3'
miRNA:   3'- -CCUGGACUGCCUgGGCGACGGCGA---CG- -5'
16023 5' -60.5 NC_004065.1 + 178510 0.72 0.509796
Target:  5'- aGGcuuCUUGcuAgGGGCCUGCUGCUGCUGUu -3'
miRNA:   3'- -CCu--GGAC--UgCCUGGGCGACGGCGACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.