miRNA display CGI


Results 61 - 80 of 162 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16023 5' -60.5 NC_004065.1 + 224047 0.69 0.680252
Target:  5'- aGGGCCaUGACGG-CCgGUgGCCGCg-- -3'
miRNA:   3'- -CCUGG-ACUGCCuGGgCGaCGGCGacg -5'
16023 5' -60.5 NC_004065.1 + 200007 0.69 0.680252
Target:  5'- -aGCUUGACGGGCaCCGCgGUCGUcagggGCa -3'
miRNA:   3'- ccUGGACUGCCUG-GGCGaCGGCGa----CG- -5'
16023 5' -60.5 NC_004065.1 + 66143 0.69 0.670725
Target:  5'- uGGGCC--GCGGACCgGC-GCCaGCUGg -3'
miRNA:   3'- -CCUGGacUGCCUGGgCGaCGG-CGACg -5'
16023 5' -60.5 NC_004065.1 + 228768 0.69 0.66117
Target:  5'- uGGACCucaUGACGGACgCGggaaccGCCGgaGCa -3'
miRNA:   3'- -CCUGG---ACUGCCUGgGCga----CGGCgaCG- -5'
16023 5' -60.5 NC_004065.1 + 61056 0.69 0.66117
Target:  5'- -cGCgCUGACGGACaCCGagagGCCGUUGg -3'
miRNA:   3'- ccUG-GACUGCCUG-GGCga--CGGCGACg -5'
16023 5' -60.5 NC_004065.1 + 120391 0.69 0.651594
Target:  5'- cGGAUCgGGCGGACgCUGCUccuucGCCGCg-- -3'
miRNA:   3'- -CCUGGaCUGCCUG-GGCGA-----CGGCGacg -5'
16023 5' -60.5 NC_004065.1 + 63060 0.69 0.642005
Target:  5'- cGAUCc--CGGACCUGCUGUCGC-GCg -3'
miRNA:   3'- cCUGGacuGCCUGGGCGACGGCGaCG- -5'
16023 5' -60.5 NC_004065.1 + 60455 0.7 0.594085
Target:  5'- aGGACCacgucGACGGAgcuCUCGaCUGCCGC-GCc -3'
miRNA:   3'- -CCUGGa----CUGCCU---GGGC-GACGGCGaCG- -5'
16023 5' -60.5 NC_004065.1 + 66924 0.7 0.594085
Target:  5'- aGACCUGACGaACCCGCUacGCCug-GCc -3'
miRNA:   3'- cCUGGACUGCcUGGGCGA--CGGcgaCG- -5'
16023 5' -60.5 NC_004065.1 + 118461 0.7 0.607473
Target:  5'- cGGCCgGGCGGuugGCucucggugauaguugCCGCUGuuGCUGCg -3'
miRNA:   3'- cCUGGaCUGCC---UG---------------GGCGACggCGACG- -5'
16023 5' -60.5 NC_004065.1 + 68736 0.7 0.622812
Target:  5'- --uCCUGACGGGgUCGCUGCCGg--- -3'
miRNA:   3'- ccuGGACUGCCUgGGCGACGGCgacg -5'
16023 5' -60.5 NC_004065.1 + 34898 0.7 0.632408
Target:  5'- uGGCCUGGCGGaaaguagacaGCCCGgUGCgG-UGCg -3'
miRNA:   3'- cCUGGACUGCC----------UGGGCgACGgCgACG- -5'
16023 5' -60.5 NC_004065.1 + 67330 0.7 0.632408
Target:  5'- uGGAcuuCCUGACguacgcgagagGGAagCCGCUGCCGgUGUa -3'
miRNA:   3'- -CCU---GGACUG-----------CCUg-GGCGACGGCgACG- -5'
16023 5' -60.5 NC_004065.1 + 69443 0.7 0.636247
Target:  5'- uGGACUcGACGGACaucgugucgcagaugUCGC-GCCgGCUGCg -3'
miRNA:   3'- -CCUGGaCUGCCUG---------------GGCGaCGG-CGACG- -5'
16023 5' -60.5 NC_004065.1 + 63866 0.75 0.352275
Target:  5'- cGGugCaGACGucGGCgCCGCUGCCGCcgGCg -3'
miRNA:   3'- -CCugGaCUGC--CUG-GGCGACGGCGa-CG- -5'
16023 5' -60.5 NC_004065.1 + 129693 0.76 0.323792
Target:  5'- cGGACgaguguCUGACGGACgCGgUGUgGCUGCg -3'
miRNA:   3'- -CCUG------GACUGCCUGgGCgACGgCGACG- -5'
16023 5' -60.5 NC_004065.1 + 109207 0.76 0.29065
Target:  5'- aGGGCCgcguacGCGGGCCUGUUcacGCCGCUGUa -3'
miRNA:   3'- -CCUGGac----UGCCUGGGCGA---CGGCGACG- -5'
16023 5' -60.5 NC_004065.1 + 101253 0.77 0.284349
Target:  5'- -cGCCggcGACGGcGCCCucaacGCUGCCGCUGCc -3'
miRNA:   3'- ccUGGa--CUGCC-UGGG-----CGACGGCGACG- -5'
16023 5' -60.5 NC_004065.1 + 104991 0.77 0.272677
Target:  5'- cGGGCCUGaACGGGCggcugugugacgagCCGCUGCuggcguacgugagcgCGCUGCa -3'
miRNA:   3'- -CCUGGAC-UGCCUG--------------GGCGACG---------------GCGACG- -5'
16023 5' -60.5 NC_004065.1 + 173874 0.66 0.846154
Target:  5'- uGAUC-GAUGcGACUCGCUcGCCgagGCUGCa -3'
miRNA:   3'- cCUGGaCUGC-CUGGGCGA-CGG---CGACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.