miRNA display CGI


Results 1 - 20 of 162 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16023 5' -60.5 NC_004065.1 + 79607 0.79 0.212061
Target:  5'- uGGACa-GGcCGGACCCGCUGCgcgcgcggaCGCUGCg -3'
miRNA:   3'- -CCUGgaCU-GCCUGGGCGACG---------GCGACG- -5'
16023 5' -60.5 NC_004065.1 + 31906 0.73 0.465138
Target:  5'- cGGGCCUGACGcGGCgCGUcGCCGaCaGCg -3'
miRNA:   3'- -CCUGGACUGC-CUGgGCGaCGGC-GaCG- -5'
16023 5' -60.5 NC_004065.1 + 195783 0.72 0.500713
Target:  5'- uGACCaUGGCGGA-CCGCggGCC-CUGCg -3'
miRNA:   3'- cCUGG-ACUGCCUgGGCGa-CGGcGACG- -5'
16023 5' -60.5 NC_004065.1 + 173874 0.66 0.846154
Target:  5'- uGAUC-GAUGcGACUCGCUcGCCgagGCUGCa -3'
miRNA:   3'- cCUGGaCUGC-CUGGGCGA-CGG---CGACG- -5'
16023 5' -60.5 NC_004065.1 + 129693 0.76 0.323792
Target:  5'- cGGACgaguguCUGACGGACgCGgUGUgGCUGCg -3'
miRNA:   3'- -CCUG------GACUGCCUGgGCgACGgCGACG- -5'
16023 5' -60.5 NC_004065.1 + 63866 0.75 0.352275
Target:  5'- cGGugCaGACGucGGCgCCGCUGCCGCcgGCg -3'
miRNA:   3'- -CCugGaCUGC--CUG-GGCGACGGCGa-CG- -5'
16023 5' -60.5 NC_004065.1 + 212233 0.75 0.352275
Target:  5'- gGGAUCgcgccaaacgcGACGGccACCCGCUgucuaaGCCGCUGCa -3'
miRNA:   3'- -CCUGGa----------CUGCC--UGGGCGA------CGGCGACG- -5'
16023 5' -60.5 NC_004065.1 + 101605 0.74 0.390307
Target:  5'- aGACUcggUGGCGG-CgCCGCcGCCGCUGCc -3'
miRNA:   3'- cCUGG---ACUGCCuG-GGCGaCGGCGACG- -5'
16023 5' -60.5 NC_004065.1 + 106334 0.73 0.430924
Target:  5'- cGGACaagGGCGGcCCgGC-GCUGCUGCa -3'
miRNA:   3'- -CCUGga-CUGCCuGGgCGaCGGCGACG- -5'
16023 5' -60.5 NC_004065.1 + 129408 0.73 0.465138
Target:  5'- cGACgCUGAUGGGgCUGCUGaaGCUGUg -3'
miRNA:   3'- cCUG-GACUGCCUgGGCGACggCGACG- -5'
16023 5' -60.5 NC_004065.1 + 61454 0.73 0.44785
Target:  5'- cGGGCCgaGAC--GCCCGCUGUCGCcGCc -3'
miRNA:   3'- -CCUGGa-CUGccUGGGCGACGGCGaCG- -5'
16023 5' -60.5 NC_004065.1 + 78693 0.74 0.414378
Target:  5'- uGAUCUGAgCGGAUCUGCUGCgGUUGa -3'
miRNA:   3'- cCUGGACU-GCCUGGGCGACGgCGACg -5'
16023 5' -60.5 NC_004065.1 + 104991 0.77 0.272677
Target:  5'- cGGGCCUGaACGGGCggcugugugacgagCCGCUGCuggcguacgugagcgCGCUGCa -3'
miRNA:   3'- -CCUGGAC-UGCCUG--------------GGCGACG---------------GCGACG- -5'
16023 5' -60.5 NC_004065.1 + 141650 0.73 0.45645
Target:  5'- aGGGCggUGGCGGugCCGCgGCCGCg-- -3'
miRNA:   3'- -CCUGg-ACUGCCugGGCGaCGGCGacg -5'
16023 5' -60.5 NC_004065.1 + 101253 0.77 0.284349
Target:  5'- -cGCCggcGACGGcGCCCucaacGCUGCCGCUGCc -3'
miRNA:   3'- ccUGGa--CUGCC-UGGG-----CGACGGCGACG- -5'
16023 5' -60.5 NC_004065.1 + 105195 0.74 0.413561
Target:  5'- uGGACCaGGCGGAgCCGCUGUucguggaCGCccgGCg -3'
miRNA:   3'- -CCUGGaCUGCCUgGGCGACG-------GCGa--CG- -5'
16023 5' -60.5 NC_004065.1 + 206306 0.73 0.45645
Target:  5'- cGGACCgGACGGACCgCGaCUGCUuGUcggGCg -3'
miRNA:   3'- -CCUGGaCUGCCUGG-GC-GACGG-CGa--CG- -5'
16023 5' -60.5 NC_004065.1 + 89827 0.72 0.482768
Target:  5'- cGACCUGcuggUGGugCUGCuacUGCCGCUGUu -3'
miRNA:   3'- cCUGGACu---GCCugGGCG---ACGGCGACG- -5'
16023 5' -60.5 NC_004065.1 + 109207 0.76 0.29065
Target:  5'- aGGGCCgcguacGCGGGCCUGUUcacGCCGCUGUa -3'
miRNA:   3'- -CCUGGac----UGCCUGGGCGA---CGGCGACG- -5'
16023 5' -60.5 NC_004065.1 + 99942 0.75 0.352275
Target:  5'- cGGACCgccGCGGcGgCgGCUGCUGCUGCg -3'
miRNA:   3'- -CCUGGac-UGCC-UgGgCGACGGCGACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.