miRNA display CGI


Results 21 - 40 of 162 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16023 5' -60.5 NC_004065.1 + 173380 0.71 0.537437
Target:  5'- cGACggUGAagGGugCCGCgGCCGCUGCc -3'
miRNA:   3'- cCUGg-ACUg-CCugGGCGaCGGCGACG- -5'
16023 5' -60.5 NC_004065.1 + 195783 0.72 0.500713
Target:  5'- uGACCaUGGCGGA-CCGCggGCC-CUGCg -3'
miRNA:   3'- cCUGG-ACUGCCUgGGCGa-CGGcGACG- -5'
16023 5' -60.5 NC_004065.1 + 78693 0.74 0.414378
Target:  5'- uGAUCUGAgCGGAUCUGCUGCgGUUGa -3'
miRNA:   3'- cCUGGACU-GCCUGGGCGACGgCGACg -5'
16023 5' -60.5 NC_004065.1 + 109207 0.76 0.29065
Target:  5'- aGGGCCgcguacGCGGGCCUGUUcacGCCGCUGUa -3'
miRNA:   3'- -CCUGGac----UGCCUGGGCGA---CGGCGACG- -5'
16023 5' -60.5 NC_004065.1 + 116584 0.69 0.66117
Target:  5'- gGGGCaC-GGCGGGCCCcccgGCcGCCGCUcuGCg -3'
miRNA:   3'- -CCUG-GaCUGCCUGGG----CGaCGGCGA--CG- -5'
16023 5' -60.5 NC_004065.1 + 23263 0.7 0.622812
Target:  5'- gGGACCgacGCGGuacgacuggcGCCCGUaGCCGCgGCc -3'
miRNA:   3'- -CCUGGac-UGCC----------UGGGCGaCGGCGaCG- -5'
16023 5' -60.5 NC_004065.1 + 31906 0.73 0.465138
Target:  5'- cGGGCCUGACGcGGCgCGUcGCCGaCaGCg -3'
miRNA:   3'- -CCUGGACUGC-CUGgGCGaCGGC-GaCG- -5'
16023 5' -60.5 NC_004065.1 + 101253 0.77 0.284349
Target:  5'- -cGCCggcGACGGcGCCCucaacGCUGCCGCUGCc -3'
miRNA:   3'- ccUGGa--CUGCC-UGGG-----CGACGGCGACG- -5'
16023 5' -60.5 NC_004065.1 + 94946 0.7 0.613222
Target:  5'- cGACuaCUGGCgcugcgGGGCCCGCUccGCgGCUGCc -3'
miRNA:   3'- cCUG--GACUG------CCUGGGCGA--CGgCGACG- -5'
16023 5' -60.5 NC_004065.1 + 104991 0.77 0.272677
Target:  5'- cGGGCCUGaACGGGCggcugugugacgagCCGCUGCuggcguacgugagcgCGCUGCa -3'
miRNA:   3'- -CCUGGAC-UGCCUG--------------GGCGACG---------------GCGACG- -5'
16023 5' -60.5 NC_004065.1 + 89827 0.72 0.482768
Target:  5'- cGACCUGcuggUGGugCUGCuacUGCCGCUGUu -3'
miRNA:   3'- cCUGGACu---GCCugGGCG---ACGGCGACG- -5'
16023 5' -60.5 NC_004065.1 + 190244 0.71 0.55333
Target:  5'- cGGAUCUGAgcacaauccuucccCGGA-CCGa-GCCGCUGCg -3'
miRNA:   3'- -CCUGGACU--------------GCCUgGGCgaCGGCGACG- -5'
16023 5' -60.5 NC_004065.1 + 141650 0.73 0.45645
Target:  5'- aGGGCggUGGCGGugCCGCgGCCGCg-- -3'
miRNA:   3'- -CCUGg-ACUGCCugGGCGaCGGCGacg -5'
16023 5' -60.5 NC_004065.1 + 106334 0.73 0.430924
Target:  5'- cGGACaagGGCGGcCCgGC-GCUGCUGCa -3'
miRNA:   3'- -CCUGga-CUGCCuGGgCGaCGGCGACG- -5'
16023 5' -60.5 NC_004065.1 + 212233 0.75 0.352275
Target:  5'- gGGAUCgcgccaaacgcGACGGccACCCGCUgucuaaGCCGCUGCa -3'
miRNA:   3'- -CCUGGa----------CUGCC--UGGGCGA------CGGCGACG- -5'
16023 5' -60.5 NC_004065.1 + 129693 0.76 0.323792
Target:  5'- cGGACgaguguCUGACGGACgCGgUGUgGCUGCg -3'
miRNA:   3'- -CCUG------GACUGCCUGgGCgACGgCGACG- -5'
16023 5' -60.5 NC_004065.1 + 80074 0.69 0.671679
Target:  5'- aGGACCUGACGccgucuguggaucaaGCCCGCcuccUGCCGagccGCg -3'
miRNA:   3'- -CCUGGACUGCc--------------UGGGCG----ACGGCga--CG- -5'
16023 5' -60.5 NC_004065.1 + 108673 0.69 0.66117
Target:  5'- cGugCgGAUGGACCUGCUG-UGCgUGCa -3'
miRNA:   3'- cCugGaCUGCCUGGGCGACgGCG-ACG- -5'
16023 5' -60.5 NC_004065.1 + 129627 0.69 0.651594
Target:  5'- cGGA---GAacUGGACCCGCcgGCUGCUGCc -3'
miRNA:   3'- -CCUggaCU--GCCUGGGCGa-CGGCGACG- -5'
16023 5' -60.5 NC_004065.1 + 120746 0.7 0.622812
Target:  5'- cGGCgUGACccaGGACaCUGCUGCCGCg-- -3'
miRNA:   3'- cCUGgACUG---CCUG-GGCGACGGCGacg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.