miRNA display CGI


Results 1 - 20 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16025 3' -58.4 NC_004065.1 + 68812 0.66 0.901471
Target:  5'- gGCGCUGcgCGaggUCGAGCuGCUGaaguCGCa- -3'
miRNA:   3'- -CGCGACuaGC---AGCUCGcCGAC----GCGag -5'
16025 3' -58.4 NC_004065.1 + 26360 0.66 0.901471
Target:  5'- gGCGCUGG-CGaCG-GCGGCggggauacgggGCGUUCc -3'
miRNA:   3'- -CGCGACUaGCaGCuCGCCGa----------CGCGAG- -5'
16025 3' -58.4 NC_004065.1 + 145756 0.66 0.901471
Target:  5'- uGCGCcGAUCGcgUCGcGCGccggucGCggGCGCUCg -3'
miRNA:   3'- -CGCGaCUAGC--AGCuCGC------CGa-CGCGAG- -5'
16025 3' -58.4 NC_004065.1 + 133855 0.66 0.901471
Target:  5'- uCGCUGGgcuUCGUCGAGUcgcaagacGGC-GCGC-Cg -3'
miRNA:   3'- cGCGACU---AGCAGCUCG--------CCGaCGCGaG- -5'
16025 3' -58.4 NC_004065.1 + 162436 0.66 0.895266
Target:  5'- cGCGCU-AUC-UCGAGCcgaGGCcccUGCGCUUc -3'
miRNA:   3'- -CGCGAcUAGcAGCUCG---CCG---ACGCGAG- -5'
16025 3' -58.4 NC_004065.1 + 129699 0.66 0.895266
Target:  5'- aGUGuCUGA-CGgacgCGGuGUGGCUGCGCg- -3'
miRNA:   3'- -CGC-GACUaGCa---GCU-CGCCGACGCGag -5'
16025 3' -58.4 NC_004065.1 + 116133 0.66 0.888849
Target:  5'- -aGCUGGUCGgCGuccuGCGGCg--GCUCg -3'
miRNA:   3'- cgCGACUAGCaGCu---CGCCGacgCGAG- -5'
16025 3' -58.4 NC_004065.1 + 223234 0.66 0.875393
Target:  5'- aGCGUUGAUgguaggcggUGUgGuAGuCGGCUGCGUUUg -3'
miRNA:   3'- -CGCGACUA---------GCAgC-UC-GCCGACGCGAG- -5'
16025 3' -58.4 NC_004065.1 + 149446 0.66 0.875393
Target:  5'- cGCGCUcGAUCGUguaguucgaguaCGAGauGCUGUcCUCg -3'
miRNA:   3'- -CGCGA-CUAGCA------------GCUCgcCGACGcGAG- -5'
16025 3' -58.4 NC_004065.1 + 41488 0.66 0.875393
Target:  5'- uGCGCcgGggCGUCGGGacgGGgaGCGCg- -3'
miRNA:   3'- -CGCGa-CuaGCAGCUCg--CCgaCGCGag -5'
16025 3' -58.4 NC_004065.1 + 187404 0.66 0.875393
Target:  5'- cGCGgUGuggCGUCGAG-GGCgaGCGCa- -3'
miRNA:   3'- -CGCgACua-GCAGCUCgCCGa-CGCGag -5'
16025 3' -58.4 NC_004065.1 + 26371 0.66 0.874699
Target:  5'- gGCGCUGAUaugCGUggugUGGGUGuguuggcgagagaGUUGCGCUCg -3'
miRNA:   3'- -CGCGACUA---GCA----GCUCGC-------------CGACGCGAG- -5'
16025 3' -58.4 NC_004065.1 + 96160 0.66 0.873305
Target:  5'- cGCGCUccucaaguggaugcGuUUGUUGAGCGGCUGgucCGuCUCg -3'
miRNA:   3'- -CGCGA--------------CuAGCAGCUCGCCGAC---GC-GAG- -5'
16025 3' -58.4 NC_004065.1 + 205494 0.66 0.873305
Target:  5'- cCGCUGccGUCGUCGcuGCcgccgccaucuuggGGCcgGCGCUCa -3'
miRNA:   3'- cGCGAC--UAGCAGCu-CG--------------CCGa-CGCGAG- -5'
16025 3' -58.4 NC_004065.1 + 164549 0.67 0.861136
Target:  5'- uCGCUG--UGUCGAGcCGGCggcgGCGC-Cg -3'
miRNA:   3'- cGCGACuaGCAGCUC-GCCGa---CGCGaG- -5'
16025 3' -58.4 NC_004065.1 + 187302 0.67 0.85372
Target:  5'- cGCGCUgcGAUCacUgGGGCGGaggaGCGCUCg -3'
miRNA:   3'- -CGCGA--CUAGc-AgCUCGCCga--CGCGAG- -5'
16025 3' -58.4 NC_004065.1 + 79342 0.67 0.85372
Target:  5'- cGCGCgGAggaCGa-GGGCGGCgcgGCGCUg -3'
miRNA:   3'- -CGCGaCUa--GCagCUCGCCGa--CGCGAg -5'
16025 3' -58.4 NC_004065.1 + 197563 0.67 0.846119
Target:  5'- cGCGCcgacgaccUGGUgGgcauGCGGCUGCGCUa -3'
miRNA:   3'- -CGCG--------ACUAgCagcuCGCCGACGCGAg -5'
16025 3' -58.4 NC_004065.1 + 206320 0.67 0.846119
Target:  5'- cGCGaCUGcUUGUCGGGCGGgUGUcugGcCUCg -3'
miRNA:   3'- -CGC-GACuAGCAGCUCGCCgACG---C-GAG- -5'
16025 3' -58.4 NC_004065.1 + 138536 0.67 0.838338
Target:  5'- gGCGCUcGAacgCGgcaCGAGCGGCgGCGgaCu -3'
miRNA:   3'- -CGCGA-CUa--GCa--GCUCGCCGaCGCgaG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.