miRNA display CGI


Results 1 - 20 of 229 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16025 5' -56.2 NC_004065.1 + 162393 0.66 0.961999
Target:  5'- cGACGCcacCGGCAUCUCGAa---CGCCg -3'
miRNA:   3'- uCUGCGc--GUCGUAGGGCUggaaGUGG- -5'
16025 5' -56.2 NC_004065.1 + 47289 0.66 0.961999
Target:  5'- cGACGUGuCGGUGgcCCCGGCg-UCGCCc -3'
miRNA:   3'- uCUGCGC-GUCGUa-GGGCUGgaAGUGG- -5'
16025 5' -56.2 NC_004065.1 + 128592 0.66 0.961999
Target:  5'- gGGucCGCcgGCGGCGaccucuUCuCCGACCU-CACCa -3'
miRNA:   3'- -UCu-GCG--CGUCGU------AG-GGCUGGAaGUGG- -5'
16025 5' -56.2 NC_004065.1 + 182110 0.66 0.961999
Target:  5'- gAGACGCGUAcGUGUCa-GGCCUUUuucuguACCa -3'
miRNA:   3'- -UCUGCGCGU-CGUAGggCUGGAAG------UGG- -5'
16025 5' -56.2 NC_004065.1 + 34471 0.66 0.961325
Target:  5'- cGGCGCGaUGGCGgagUCUGACCUguucauagaucgCGCCg -3'
miRNA:   3'- uCUGCGC-GUCGUa--GGGCUGGAa-----------GUGG- -5'
16025 5' -56.2 NC_004065.1 + 133035 0.66 0.961325
Target:  5'- cAGACGuCGCAGCAgcgcgacggaCGGCCggCGCa -3'
miRNA:   3'- -UCUGC-GCGUCGUagg-------GCUGGaaGUGg -5'
16025 5' -56.2 NC_004065.1 + 100407 0.66 0.958546
Target:  5'- cAGAUGCGgAGCAUCauGAUCcgCACg -3'
miRNA:   3'- -UCUGCGCgUCGUAGggCUGGaaGUGg -5'
16025 5' -56.2 NC_004065.1 + 113261 0.66 0.958546
Target:  5'- cGACagGUGCAGaaaccgCCCGACgcggaucguCUUCACCa -3'
miRNA:   3'- uCUG--CGCGUCgua---GGGCUG---------GAAGUGG- -5'
16025 5' -56.2 NC_004065.1 + 53261 0.66 0.958546
Target:  5'- gGGGCGCGaggAGUcUCCCGcgucACUgaUUCGCCa -3'
miRNA:   3'- -UCUGCGCg--UCGuAGGGC----UGG--AAGUGG- -5'
16025 5' -56.2 NC_004065.1 + 200120 0.66 0.958546
Target:  5'- aGGAcuuCGCGCGGgccgucaacaAUCCCGAUCUcUGCCg -3'
miRNA:   3'- -UCU---GCGCGUCg---------UAGGGCUGGAaGUGG- -5'
16025 5' -56.2 NC_004065.1 + 103954 0.66 0.958546
Target:  5'- uGGAC---CAGCGg-CUGACCUUCACCg -3'
miRNA:   3'- -UCUGcgcGUCGUagGGCUGGAAGUGG- -5'
16025 5' -56.2 NC_004065.1 + 150749 0.66 0.958546
Target:  5'- cGAUGCGCAGgGagCUCGACUcuaGCCg -3'
miRNA:   3'- uCUGCGCGUCgUa-GGGCUGGaagUGG- -5'
16025 5' -56.2 NC_004065.1 + 196123 0.66 0.958546
Target:  5'- cGGCGgGUacGGCAUCCgCGgucucACCcUCGCCu -3'
miRNA:   3'- uCUGCgCG--UCGUAGG-GC-----UGGaAGUGG- -5'
16025 5' -56.2 NC_004065.1 + 78599 0.66 0.958189
Target:  5'- cGGCGgGCAGaaaagaggucgacCAcCCCGACCgaccCGCCu -3'
miRNA:   3'- uCUGCgCGUC-------------GUaGGGCUGGaa--GUGG- -5'
16025 5' -56.2 NC_004065.1 + 176155 0.66 0.958189
Target:  5'- cGACGCcaacggaGUGGcCAUCCCGGCgCgacCGCCg -3'
miRNA:   3'- uCUGCG-------CGUC-GUAGGGCUG-Gaa-GUGG- -5'
16025 5' -56.2 NC_004065.1 + 198217 0.66 0.954884
Target:  5'- --cCGCGUccGGCAggcccCCCGGCCUguaGCCc -3'
miRNA:   3'- ucuGCGCG--UCGUa----GGGCUGGAag-UGG- -5'
16025 5' -56.2 NC_004065.1 + 61513 0.66 0.954884
Target:  5'- aAGaACGCGgcgaCAGCAUCCCGcagGCgaUCGCa -3'
miRNA:   3'- -UC-UGCGC----GUCGUAGGGC---UGgaAGUGg -5'
16025 5' -56.2 NC_004065.1 + 71298 0.66 0.954884
Target:  5'- cGACG-GCGGCcaagAUCUCGAUCUccUCGCUc -3'
miRNA:   3'- uCUGCgCGUCG----UAGGGCUGGA--AGUGG- -5'
16025 5' -56.2 NC_004065.1 + 188062 0.66 0.954884
Target:  5'- gAGAUcaGCGcCAGCGUcgagaaCCCGGCCgugCACg -3'
miRNA:   3'- -UCUG--CGC-GUCGUA------GGGCUGGaa-GUGg -5'
16025 5' -56.2 NC_004065.1 + 104418 0.66 0.954884
Target:  5'- cAGGCGCGCAuCGaCCCG-CCgcgCACg -3'
miRNA:   3'- -UCUGCGCGUcGUaGGGCuGGaa-GUGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.