miRNA display CGI


Results 1 - 20 of 20 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1603 5' -48.7 NC_001347.2 + 19344 0.66 0.999477
Target:  5'- aGAGGccuGGUUACAgCgcgGCCGGCGAGc -3'
miRNA:   3'- aUUCCuuuUCGAUGU-Ga--CGGUCGUUU- -5'
1603 5' -48.7 NC_001347.2 + 195339 0.66 0.999348
Target:  5'- gGAGGAGAcugugaugacuAGCUAUAUaGCCGGUg-- -3'
miRNA:   3'- aUUCCUUU-----------UCGAUGUGaCGGUCGuuu -5'
1603 5' -48.7 NC_001347.2 + 88237 0.66 0.999192
Target:  5'- cGAGGGGucGCUGC-C-GCCGGUGAAg -3'
miRNA:   3'- aUUCCUUuuCGAUGuGaCGGUCGUUU- -5'
1603 5' -48.7 NC_001347.2 + 196916 0.66 0.999005
Target:  5'- cAAGcgcGAGCUGCugUGCCuGCAc- -3'
miRNA:   3'- aUUCcuuUUCGAUGugACGGuCGUuu -5'
1603 5' -48.7 NC_001347.2 + 110141 0.66 0.998943
Target:  5'- cGAGGccgaagccgccagcGGAAGCUuuggucgccuGCACUGCCAGguGc -3'
miRNA:   3'- aUUCC--------------UUUUCGA----------UGUGACGGUCguUu -5'
1603 5' -48.7 NC_001347.2 + 9201 0.66 0.998783
Target:  5'- -cGGGAAAAGaguCGCUggcgaaacucgGCCAGCAGAc -3'
miRNA:   3'- auUCCUUUUCgauGUGA-----------CGGUCGUUU- -5'
1603 5' -48.7 NC_001347.2 + 156762 0.66 0.998783
Target:  5'- gGAGGAGGAGUUGCuggcuCUGgCGGgAGAa -3'
miRNA:   3'- aUUCCUUUUCGAUGu----GACgGUCgUUU- -5'
1603 5' -48.7 NC_001347.2 + 142938 0.67 0.997423
Target:  5'- aGGGGAGGAGUgucagACACaGCCGGUc-- -3'
miRNA:   3'- aUUCCUUUUCGa----UGUGaCGGUCGuuu -5'
1603 5' -48.7 NC_001347.2 + 66827 0.67 0.997423
Target:  5'- cGAGGAAGAGUUACugGCaGCCgcGGCGGu -3'
miRNA:   3'- aUUCCUUUUCGAUG--UGaCGG--UCGUUu -5'
1603 5' -48.7 NC_001347.2 + 196122 0.67 0.996772
Target:  5'- cGAGGAgcgcgaacucaucgGccGCUGC-CUGCCGGCGGc -3'
miRNA:   3'- aUUCCU--------------UuuCGAUGuGACGGUCGUUu -5'
1603 5' -48.7 NC_001347.2 + 188292 0.68 0.996369
Target:  5'- gGAGGAGAGGCaGCAgaacCUG-CAGCAAc -3'
miRNA:   3'- aUUCCUUUUCGaUGU----GACgGUCGUUu -5'
1603 5' -48.7 NC_001347.2 + 202339 0.68 0.995722
Target:  5'- aGAGGGAAGGUcGCGCcGCCgcAGCAu- -3'
miRNA:   3'- aUUCCUUUUCGaUGUGaCGG--UCGUuu -5'
1603 5' -48.7 NC_001347.2 + 125829 0.68 0.994983
Target:  5'- --uGGGccAGCUGCAUcgUGCCGGCGc- -3'
miRNA:   3'- auuCCUuuUCGAUGUG--ACGGUCGUuu -5'
1603 5' -48.7 NC_001347.2 + 89356 0.68 0.993095
Target:  5'- cGGGGAAAAGCgagACGgUGCUcuggccgGGCAAGa -3'
miRNA:   3'- aUUCCUUUUCGa--UGUgACGG-------UCGUUU- -5'
1603 5' -48.7 NC_001347.2 + 142389 0.69 0.99213
Target:  5'- cGGGGggGAGgUGCACgaccUGUCGGCGc- -3'
miRNA:   3'- aUUCCuuUUCgAUGUG----ACGGUCGUuu -5'
1603 5' -48.7 NC_001347.2 + 1718 0.69 0.990934
Target:  5'- --cGGAcgGGAGCUGCGCcggcgguggGCCGGCAc- -3'
miRNA:   3'- auuCCU--UUUCGAUGUGa--------CGGUCGUuu -5'
1603 5' -48.7 NC_001347.2 + 1944 0.71 0.972739
Target:  5'- --uGGcuGGGCUGCGCggcgggGCCGGCGAc -3'
miRNA:   3'- auuCCuuUUCGAUGUGa-----CGGUCGUUu -5'
1603 5' -48.7 NC_001347.2 + 98915 0.73 0.93665
Target:  5'- cGAGGAGuuGCUguuGCACaccacgGCCGGCAGAa -3'
miRNA:   3'- aUUCCUUuuCGA---UGUGa-----CGGUCGUUU- -5'
1603 5' -48.7 NC_001347.2 + 196722 0.79 0.678342
Target:  5'- aAAGGcGAGGCUGCGCUGCUGcGCAAGg -3'
miRNA:   3'- aUUCCuUUUCGAUGUGACGGU-CGUUU- -5'
1603 5' -48.7 NC_001347.2 + 158237 1.05 0.024509
Target:  5'- gUAAGGAAAAGCUACACUGCCAGCAAAa -3'
miRNA:   3'- -AUUCCUUUUCGAUGUGACGGUCGUUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.