miRNA display CGI


Results 1 - 20 of 40 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16030 3' -58.9 NC_004065.1 + 81976 0.66 0.900911
Target:  5'- uGAUGaUGUCGUCGacguuuucGGCgGCGGGgaaGGCg -3'
miRNA:   3'- -CUGCcACAGCAGCa-------CCGaCGCCC---UCG- -5'
16030 3' -58.9 NC_004065.1 + 178511 0.66 0.900911
Target:  5'- cGACGGcGUCGUCaUGGCcuacGacagGGGAGUc -3'
miRNA:   3'- -CUGCCaCAGCAGcACCGa---Cg---CCCUCG- -5'
16030 3' -58.9 NC_004065.1 + 31754 0.66 0.895385
Target:  5'- cGCGGUGUCGgacgcguugcacugcUCGUGGUcguugaucggggUGCugggcuacaggccgGGGGGCc -3'
miRNA:   3'- cUGCCACAGC---------------AGCACCG------------ACG--------------CCCUCG- -5'
16030 3' -58.9 NC_004065.1 + 128154 0.66 0.894761
Target:  5'- -cCGGcGUCGUCGU--CUGCGGcGGCg -3'
miRNA:   3'- cuGCCaCAGCAGCAccGACGCCcUCG- -5'
16030 3' -58.9 NC_004065.1 + 49652 0.66 0.888404
Target:  5'- aGACGGUGgaccaGUuuccCGUGGCggugccGCcGGAGCa -3'
miRNA:   3'- -CUGCCACag---CA----GCACCGa-----CGcCCUCG- -5'
16030 3' -58.9 NC_004065.1 + 166719 0.66 0.881844
Target:  5'- --aGGaacUCGUCGUugagcucgaugGGCaGCGGGAGCu -3'
miRNA:   3'- cugCCac-AGCAGCA-----------CCGaCGCCCUCG- -5'
16030 3' -58.9 NC_004065.1 + 184805 0.66 0.881844
Target:  5'- gGACGGUGaCGcaacgGUGGCggugGCGGcAGCg -3'
miRNA:   3'- -CUGCCACaGCag---CACCGa---CGCCcUCG- -5'
16030 3' -58.9 NC_004065.1 + 224902 0.66 0.875084
Target:  5'- cACGGUGUCGUCGguga-GCGGaGGCc -3'
miRNA:   3'- cUGCCACAGCAGCaccgaCGCCcUCG- -5'
16030 3' -58.9 NC_004065.1 + 189052 0.66 0.875084
Target:  5'- cGACGauuauGUGccUCG-CGUGGacgucuucCUGCGGGGGCu -3'
miRNA:   3'- -CUGC-----CAC--AGCaGCACC--------GACGCCCUCG- -5'
16030 3' -58.9 NC_004065.1 + 142773 0.66 0.868128
Target:  5'- cGACGGccUGcUgGUgGUGGC-GcCGGGGGCg -3'
miRNA:   3'- -CUGCC--AC-AgCAgCACCGaC-GCCCUCG- -5'
16030 3' -58.9 NC_004065.1 + 59746 0.67 0.860982
Target:  5'- cGAUGGUGcCGaccgCGUGGCcgauggugGCGGcGGCg -3'
miRNA:   3'- -CUGCCACaGCa---GCACCGa-------CGCCcUCG- -5'
16030 3' -58.9 NC_004065.1 + 174385 0.67 0.853649
Target:  5'- uGACGGUGUCGUUcaugGUcGGgUagacgagaaagaGCGGGAGg -3'
miRNA:   3'- -CUGCCACAGCAG----CA-CCgA------------CGCCCUCg -5'
16030 3' -58.9 NC_004065.1 + 77781 0.67 0.853649
Target:  5'- uGAUGGcgUGcUCGUaccgcgacaaCGUGuuccugcagcaGCUGCGGGAGCg -3'
miRNA:   3'- -CUGCC--AC-AGCA----------GCAC-----------CGACGCCCUCG- -5'
16030 3' -58.9 NC_004065.1 + 74593 0.67 0.846137
Target:  5'- -uUGGUGcCGUCgGUGGCggugGCGGccGAGUu -3'
miRNA:   3'- cuGCCACaGCAG-CACCGa---CGCC--CUCG- -5'
16030 3' -58.9 NC_004065.1 + 56013 0.67 0.838449
Target:  5'- -cCGGU-UCGUCGUcauGCUGCcGGAGCu -3'
miRNA:   3'- cuGCCAcAGCAGCAc--CGACGcCCUCG- -5'
16030 3' -58.9 NC_004065.1 + 55406 0.67 0.836109
Target:  5'- cGACGGgaguguuucUCGUCGUGGUgguggcgugcuuccUaGCGGGGGUc -3'
miRNA:   3'- -CUGCCac-------AGCAGCACCG--------------A-CGCCCUCG- -5'
16030 3' -58.9 NC_004065.1 + 169706 0.67 0.830592
Target:  5'- cGCGGgccuagCGUcCGUcGGCUGCGGGAc- -3'
miRNA:   3'- cUGCCaca---GCA-GCA-CCGACGCCCUcg -5'
16030 3' -58.9 NC_004065.1 + 181213 0.68 0.814398
Target:  5'- gGAUGGUGcCGuUCGgccGGCUGCGuGGAc- -3'
miRNA:   3'- -CUGCCACaGC-AGCa--CCGACGC-CCUcg -5'
16030 3' -58.9 NC_004065.1 + 225015 0.68 0.797608
Target:  5'- -cCGucugGUCGUCGUGGUUGCGauaGGAGa -3'
miRNA:   3'- cuGCca--CAGCAGCACCGACGC---CCUCg -5'
16030 3' -58.9 NC_004065.1 + 121998 0.68 0.789008
Target:  5'- cGCGGUGUUGUCGaaGGU--CGGGAGg -3'
miRNA:   3'- cUGCCACAGCAGCa-CCGacGCCCUCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.