miRNA display CGI


Results 1 - 20 of 40 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16030 3' -58.9 NC_004065.1 + 166719 0.66 0.881844
Target:  5'- --aGGaacUCGUCGUugagcucgaugGGCaGCGGGAGCu -3'
miRNA:   3'- cugCCac-AGCAGCA-----------CCGaCGCCCUCG- -5'
16030 3' -58.9 NC_004065.1 + 121998 0.68 0.789008
Target:  5'- cGCGGUGUUGUCGaaGGU--CGGGAGg -3'
miRNA:   3'- cUGCCACAGCAGCa-CCGacGCCCUCg -5'
16030 3' -58.9 NC_004065.1 + 225015 0.68 0.797608
Target:  5'- -cCGucugGUCGUCGUGGUUGCGauaGGAGa -3'
miRNA:   3'- cuGCca--CAGCAGCACCGACGC---CCUCg -5'
16030 3' -58.9 NC_004065.1 + 169706 0.67 0.830592
Target:  5'- cGCGGgccuagCGUcCGUcGGCUGCGGGAc- -3'
miRNA:   3'- cUGCCaca---GCA-GCA-CCGACGCCCUcg -5'
16030 3' -58.9 NC_004065.1 + 74593 0.67 0.846137
Target:  5'- -uUGGUGcCGUCgGUGGCggugGCGGccGAGUu -3'
miRNA:   3'- cuGCCACaGCAG-CACCGa---CGCC--CUCG- -5'
16030 3' -58.9 NC_004065.1 + 174385 0.67 0.853649
Target:  5'- uGACGGUGUCGUUcaugGUcGGgUagacgagaaagaGCGGGAGg -3'
miRNA:   3'- -CUGCCACAGCAG----CA-CCgA------------CGCCCUCg -5'
16030 3' -58.9 NC_004065.1 + 77781 0.67 0.853649
Target:  5'- uGAUGGcgUGcUCGUaccgcgacaaCGUGuuccugcagcaGCUGCGGGAGCg -3'
miRNA:   3'- -CUGCC--AC-AGCA----------GCAC-----------CGACGCCCUCG- -5'
16030 3' -58.9 NC_004065.1 + 142773 0.66 0.868128
Target:  5'- cGACGGccUGcUgGUgGUGGC-GcCGGGGGCg -3'
miRNA:   3'- -CUGCC--AC-AgCAgCACCGaC-GCCCUCG- -5'
16030 3' -58.9 NC_004065.1 + 224902 0.66 0.875084
Target:  5'- cACGGUGUCGUCGguga-GCGGaGGCc -3'
miRNA:   3'- cUGCCACAGCAGCaccgaCGCCcUCG- -5'
16030 3' -58.9 NC_004065.1 + 26612 0.69 0.725677
Target:  5'- cGGCGGacagaGUCGgagUGcGGCgacaGCGGGAGCa -3'
miRNA:   3'- -CUGCCa----CAGCa--GCaCCGa---CGCCCUCG- -5'
16030 3' -58.9 NC_004065.1 + 164233 0.69 0.716277
Target:  5'- cGGCGGUGaaGUCG-GGauCUGaGGGAGCg -3'
miRNA:   3'- -CUGCCACagCAGCaCC--GACgCCCUCG- -5'
16030 3' -58.9 NC_004065.1 + 127193 0.69 0.716277
Target:  5'- aGGCGGgcccUCGgggaCGUGGUU-CGGGAGCg -3'
miRNA:   3'- -CUGCCac--AGCa---GCACCGAcGCCCUCG- -5'
16030 3' -58.9 NC_004065.1 + 62370 0.75 0.434858
Target:  5'- cGGCGGUGgcggcggggGUgGUGGCgGCGGGGGUg -3'
miRNA:   3'- -CUGCCACag-------CAgCACCGaCGCCCUCG- -5'
16030 3' -58.9 NC_004065.1 + 72476 0.74 0.478575
Target:  5'- aGACGGUGUCGgCGcGGCUGaagaccgGGGAGa -3'
miRNA:   3'- -CUGCCACAGCaGCaCCGACg------CCCUCg -5'
16030 3' -58.9 NC_004065.1 + 19563 0.73 0.515047
Target:  5'- cGugGGUGUCG--GUGGCgGCGGuAGCg -3'
miRNA:   3'- -CugCCACAGCagCACCGaCGCCcUCG- -5'
16030 3' -58.9 NC_004065.1 + 36130 0.71 0.597685
Target:  5'- cGGCGGcgGUUGUgGUGGUUguguugguggaucgGCGGGAGUc -3'
miRNA:   3'- -CUGCCa-CAGCAgCACCGA--------------CGCCCUCG- -5'
16030 3' -58.9 NC_004065.1 + 35600 0.71 0.619971
Target:  5'- cGGCGGUGUCGgugCGggauccacGGCgGCGGcGGCg -3'
miRNA:   3'- -CUGCCACAGCa--GCa-------CCGaCGCCcUCG- -5'
16030 3' -58.9 NC_004065.1 + 40324 0.7 0.678106
Target:  5'- -cCGGUGUCGUCGUGGa---GGGAc- -3'
miRNA:   3'- cuGCCACAGCAGCACCgacgCCCUcg -5'
16030 3' -58.9 NC_004065.1 + 196811 0.7 0.686759
Target:  5'- aGGCGGUGggggGUCGUGGUcaccugcggcaggUGCGGGcgacgguacAGCg -3'
miRNA:   3'- -CUGCCACag--CAGCACCG-------------ACGCCC---------UCG- -5'
16030 3' -58.9 NC_004065.1 + 92260 0.7 0.706812
Target:  5'- uGCGGUG-CGaagCGUGGUcaGCGGGAGa -3'
miRNA:   3'- cUGCCACaGCa--GCACCGa-CGCCCUCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.