miRNA display CGI


Results 21 - 40 of 40 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16030 3' -58.9 NC_004065.1 + 92260 0.7 0.706812
Target:  5'- uGCGGUG-CGaagCGUGGUcaGCGGGAGa -3'
miRNA:   3'- cUGCCACaGCa--GCACCGa-CGCCCUCg -5'
16030 3' -58.9 NC_004065.1 + 127193 0.69 0.716277
Target:  5'- aGGCGGgcccUCGgggaCGUGGUU-CGGGAGCg -3'
miRNA:   3'- -CUGCCac--AGCa---GCACCGAcGCCCUCG- -5'
16030 3' -58.9 NC_004065.1 + 164233 0.69 0.716277
Target:  5'- cGGCGGUGaaGUCG-GGauCUGaGGGAGCg -3'
miRNA:   3'- -CUGCCACagCAGCaCC--GACgCCCUCG- -5'
16030 3' -58.9 NC_004065.1 + 55406 0.67 0.836109
Target:  5'- cGACGGgaguguuucUCGUCGUGGUgguggcgugcuuccUaGCGGGGGUc -3'
miRNA:   3'- -CUGCCac-------AGCAGCACCG--------------A-CGCCCUCG- -5'
16030 3' -58.9 NC_004065.1 + 56013 0.67 0.838449
Target:  5'- -cCGGU-UCGUCGUcauGCUGCcGGAGCu -3'
miRNA:   3'- cuGCCAcAGCAGCAc--CGACGcCCUCG- -5'
16030 3' -58.9 NC_004065.1 + 59746 0.67 0.860982
Target:  5'- cGAUGGUGcCGaccgCGUGGCcgauggugGCGGcGGCg -3'
miRNA:   3'- -CUGCCACaGCa---GCACCGa-------CGCCcUCG- -5'
16030 3' -58.9 NC_004065.1 + 189052 0.66 0.875084
Target:  5'- cGACGauuauGUGccUCG-CGUGGacgucuucCUGCGGGGGCu -3'
miRNA:   3'- -CUGC-----CAC--AGCaGCACC--------GACGCCCUCG- -5'
16030 3' -58.9 NC_004065.1 + 184805 0.66 0.881844
Target:  5'- gGACGGUGaCGcaacgGUGGCggugGCGGcAGCg -3'
miRNA:   3'- -CUGCCACaGCag---CACCGa---CGCCcUCG- -5'
16030 3' -58.9 NC_004065.1 + 128154 0.66 0.894761
Target:  5'- -cCGGcGUCGUCGU--CUGCGGcGGCg -3'
miRNA:   3'- cuGCCaCAGCAGCAccGACGCCcUCG- -5'
16030 3' -58.9 NC_004065.1 + 31754 0.66 0.895385
Target:  5'- cGCGGUGUCGgacgcguugcacugcUCGUGGUcguugaucggggUGCugggcuacaggccgGGGGGCc -3'
miRNA:   3'- cUGCCACAGC---------------AGCACCG------------ACG--------------CCCUCG- -5'
16030 3' -58.9 NC_004065.1 + 181213 0.68 0.814398
Target:  5'- gGAUGGUGcCGuUCGgccGGCUGCGuGGAc- -3'
miRNA:   3'- -CUGCCACaGC-AGCa--CCGACGC-CCUcg -5'
16030 3' -58.9 NC_004065.1 + 149739 0.68 0.789008
Target:  5'- uGCGGUuUCGUCaaGGCgGUGGuGAGCg -3'
miRNA:   3'- cUGCCAcAGCAGcaCCGaCGCC-CUCG- -5'
16030 3' -58.9 NC_004065.1 + 186674 0.69 0.753412
Target:  5'- gGACGaGUGUCGgggaCGcGGC-GCGuGGGGCg -3'
miRNA:   3'- -CUGC-CACAGCa---GCaCCGaCGC-CCUCG- -5'
16030 3' -58.9 NC_004065.1 + 80794 0.69 0.753412
Target:  5'- cGACGGcGgcggCGgCGgcGGCaGCGGGAGCa -3'
miRNA:   3'- -CUGCCaCa---GCaGCa-CCGaCGCCCUCG- -5'
16030 3' -58.9 NC_004065.1 + 204544 0.69 0.744253
Target:  5'- aGACGcc-UCGUCG-GGCgGCGGGAGg -3'
miRNA:   3'- -CUGCcacAGCAGCaCCGaCGCCCUCg -5'
16030 3' -58.9 NC_004065.1 + 116311 0.69 0.735005
Target:  5'- --aGGUGUCGgCGUcGGCgGCGGcAGCg -3'
miRNA:   3'- cugCCACAGCaGCA-CCGaCGCCcUCG- -5'
16030 3' -58.9 NC_004065.1 + 107753 0.7 0.706812
Target:  5'- cGGCGGaugccccagGUCGgUGUcGGC-GCGGGAGCa -3'
miRNA:   3'- -CUGCCa--------CAGCaGCA-CCGaCGCCCUCG- -5'
16030 3' -58.9 NC_004065.1 + 127474 0.75 0.418029
Target:  5'- -cCGGggagGUgGUCG-GGCgcgGCGGGAGCg -3'
miRNA:   3'- cuGCCa---CAgCAGCaCCGa--CGCCCUCG- -5'
16030 3' -58.9 NC_004065.1 + 115581 0.77 0.325898
Target:  5'- aGACGGcgGUgGUgGUGGCgGCGGGAGa -3'
miRNA:   3'- -CUGCCa-CAgCAgCACCGaCGCCCUCg -5'
16030 3' -58.9 NC_004065.1 + 178511 0.66 0.900911
Target:  5'- cGACGGcGUCGUCaUGGCcuacGacagGGGAGUc -3'
miRNA:   3'- -CUGCCaCAGCAGcACCGa---Cg---CCCUCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.