miRNA display CGI


Results 1 - 20 of 150 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16030 5' -55.5 NC_004065.1 + 71996 0.65 0.975321
Target:  5'- aUGCCC-UGGAGGugagccuGCugGACuucucgacgcugauGGCGGCg -3'
miRNA:   3'- gACGGGcACCUCU-------UGugCUG--------------CUGCUG- -5'
16030 5' -55.5 NC_004065.1 + 35179 0.66 0.974825
Target:  5'- gUGUCCGccgccguggucggccUGGAGAACGUGGCGGCcACc -3'
miRNA:   3'- gACGGGC---------------ACCUCUUGUGCUGCUGcUG- -5'
16030 5' -55.5 NC_004065.1 + 71963 0.66 0.973811
Target:  5'- -cGCCgGUGGAGccgGGCAgccCGGaGGCGACg -3'
miRNA:   3'- gaCGGgCACCUC---UUGU---GCUgCUGCUG- -5'
16030 5' -55.5 NC_004065.1 + 201197 0.66 0.973811
Target:  5'- -cGuCCCGgcucGGGcGGCGCGGCGACGuGCg -3'
miRNA:   3'- gaC-GGGCa---CCUcUUGUGCUGCUGC-UG- -5'
16030 5' -55.5 NC_004065.1 + 87095 0.66 0.973811
Target:  5'- -gGCCC-UGGugccGGAACuCGACGGcCGGCg -3'
miRNA:   3'- gaCGGGcACC----UCUUGuGCUGCU-GCUG- -5'
16030 5' -55.5 NC_004065.1 + 65443 0.66 0.973553
Target:  5'- -cGgCCGUGGuggcucuGGAGCGCGaaGCGGuCGGCg -3'
miRNA:   3'- gaCgGGCACC-------UCUUGUGC--UGCU-GCUG- -5'
16030 5' -55.5 NC_004065.1 + 171953 0.66 0.971147
Target:  5'- -cGCaaGgcgGGcGGugGCGGCGGCGGCg -3'
miRNA:   3'- gaCGggCa--CCuCUugUGCUGCUGCUG- -5'
16030 5' -55.5 NC_004065.1 + 150029 0.66 0.971147
Target:  5'- -gGCUCGgaaGGAGGAacugccCGCGGuCGGCGACc -3'
miRNA:   3'- gaCGGGCa--CCUCUU------GUGCU-GCUGCUG- -5'
16030 5' -55.5 NC_004065.1 + 212311 0.66 0.971147
Target:  5'- -cGCCUGaGGcGcAACaacaaaGCGACGACGACg -3'
miRNA:   3'- gaCGGGCaCCuC-UUG------UGCUGCUGCUG- -5'
16030 5' -55.5 NC_004065.1 + 175722 0.66 0.971147
Target:  5'- aCUGgUCGgGGAGGugGCGGaGACGAUu -3'
miRNA:   3'- -GACgGGCaCCUCUugUGCUgCUGCUG- -5'
16030 5' -55.5 NC_004065.1 + 138053 0.66 0.971147
Target:  5'- --cUCCGUGGuGAuCACGGuCGugGGCu -3'
miRNA:   3'- gacGGGCACCuCUuGUGCU-GCugCUG- -5'
16030 5' -55.5 NC_004065.1 + 172985 0.66 0.971147
Target:  5'- uUGCCCGUcGu--GC-CGACGACGAg -3'
miRNA:   3'- gACGGGCAcCucuUGuGCUGCUGCUg -5'
16030 5' -55.5 NC_004065.1 + 52832 0.66 0.971147
Target:  5'- gUGaCCGguaggGGAGAGC-CGACGAuccuguCGACg -3'
miRNA:   3'- gACgGGCa----CCUCUUGuGCUGCU------GCUG- -5'
16030 5' -55.5 NC_004065.1 + 26753 0.66 0.971147
Target:  5'- -cGUcgUCGUGGAcGACgACGACGACGGa -3'
miRNA:   3'- gaCG--GGCACCUcUUG-UGCUGCUGCUg -5'
16030 5' -55.5 NC_004065.1 + 119991 0.66 0.971147
Target:  5'- -cGCCgagcggGUGGaAGAACACGGCgGGCGGu -3'
miRNA:   3'- gaCGGg-----CACC-UCUUGUGCUG-CUGCUg -5'
16030 5' -55.5 NC_004065.1 + 200542 0.66 0.971147
Target:  5'- -cGUCCaUGGcGAGgGCGACGgGCGGCa -3'
miRNA:   3'- gaCGGGcACCuCUUgUGCUGC-UGCUG- -5'
16030 5' -55.5 NC_004065.1 + 107513 0.66 0.971147
Target:  5'- -cGCUCGcacgaGGAGGuGCGCG-CGGCGACc -3'
miRNA:   3'- gaCGGGCa----CCUCU-UGUGCuGCUGCUG- -5'
16030 5' -55.5 NC_004065.1 + 188007 0.66 0.971147
Target:  5'- -gGCUCGcGGAGGucCGCGACGguagacACGACc -3'
miRNA:   3'- gaCGGGCaCCUCUu-GUGCUGC------UGCUG- -5'
16030 5' -55.5 NC_004065.1 + 209344 0.66 0.96917
Target:  5'- aCUGCCCGgugccagcggcguggUGGAaGACGCGuacuccgaggccuGCGACGGa -3'
miRNA:   3'- -GACGGGC---------------ACCUcUUGUGC-------------UGCUGCUg -5'
16030 5' -55.5 NC_004065.1 + 145847 0.66 0.968294
Target:  5'- -cGCCCGUcGAGAucuuCucCGACGGCGuCg -3'
miRNA:   3'- gaCGGGCAcCUCUu---Gu-GCUGCUGCuG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.