miRNA display CGI


Results 1 - 20 of 150 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16030 5' -55.5 NC_004065.1 + 71996 0.65 0.975321
Target:  5'- aUGCCC-UGGAGGugagccuGCugGACuucucgacgcugauGGCGGCg -3'
miRNA:   3'- gACGGGcACCUCU-------UGugCUG--------------CUGCUG- -5'
16030 5' -55.5 NC_004065.1 + 52832 0.66 0.971147
Target:  5'- gUGaCCGguaggGGAGAGC-CGACGAuccuguCGACg -3'
miRNA:   3'- gACgGGCa----CCUCUUGuGCUGCU------GCUG- -5'
16030 5' -55.5 NC_004065.1 + 113758 0.66 0.965246
Target:  5'- -aGgCCGagGGAcAGCGCGGCGGCaGACg -3'
miRNA:   3'- gaCgGGCa-CCUcUUGUGCUGCUG-CUG- -5'
16030 5' -55.5 NC_004065.1 + 212472 0.66 0.960984
Target:  5'- -aGCCCGagcaaggGGAacGAGCGCGccaaaucgcccgcuGCGAUGACg -3'
miRNA:   3'- gaCGGGCa------CCU--CUUGUGC--------------UGCUGCUG- -5'
16030 5' -55.5 NC_004065.1 + 26753 0.66 0.971147
Target:  5'- -cGUcgUCGUGGAcGACgACGACGACGGa -3'
miRNA:   3'- gaCG--GGCACCUcUUG-UGCUGCUGCUg -5'
16030 5' -55.5 NC_004065.1 + 80771 0.66 0.961999
Target:  5'- -aGCCUuuuuagagagGGAGcAgGCGACGGCGGCg -3'
miRNA:   3'- gaCGGGca--------CCUCuUgUGCUGCUGCUG- -5'
16030 5' -55.5 NC_004065.1 + 119991 0.66 0.971147
Target:  5'- -cGCCgagcggGUGGaAGAACACGGCgGGCGGu -3'
miRNA:   3'- gaCGGg-----CACC-UCUUGUGCUG-CUGCUg -5'
16030 5' -55.5 NC_004065.1 + 41052 0.66 0.968294
Target:  5'- -aGCUCG-GGcc-GCGCGGCGACGAa -3'
miRNA:   3'- gaCGGGCaCCucuUGUGCUGCUGCUg -5'
16030 5' -55.5 NC_004065.1 + 138053 0.66 0.971147
Target:  5'- --cUCCGUGGuGAuCACGGuCGugGGCu -3'
miRNA:   3'- gacGGGCACCuCUuGUGCU-GCugCUG- -5'
16030 5' -55.5 NC_004065.1 + 152317 0.66 0.965246
Target:  5'- gUGCCgGcGGGGA---CGAUGACGGCu -3'
miRNA:   3'- gACGGgCaCCUCUuguGCUGCUGCUG- -5'
16030 5' -55.5 NC_004065.1 + 82856 0.66 0.965246
Target:  5'- uUGCCgGUGGcgaAGAGCACGcCGcucAUGGCc -3'
miRNA:   3'- gACGGgCACC---UCUUGUGCuGC---UGCUG- -5'
16030 5' -55.5 NC_004065.1 + 145847 0.66 0.968294
Target:  5'- -cGCCCGUcGAGAucuuCucCGACGGCGuCg -3'
miRNA:   3'- gaCGGGCAcCUCUu---Gu-GCUGCUGCuG- -5'
16030 5' -55.5 NC_004065.1 + 135182 0.66 0.968294
Target:  5'- aCUGCCCGagGGAcuguuGGGCGCcgccgcCGACGGCc -3'
miRNA:   3'- -GACGGGCa-CCU-----CUUGUGcu----GCUGCUG- -5'
16030 5' -55.5 NC_004065.1 + 228207 0.66 0.968294
Target:  5'- -cGUUCGUGuAGuACACGGCGauGCGACg -3'
miRNA:   3'- gaCGGGCACcUCuUGUGCUGC--UGCUG- -5'
16030 5' -55.5 NC_004065.1 + 200542 0.66 0.971147
Target:  5'- -cGUCCaUGGcGAGgGCGACGgGCGGCa -3'
miRNA:   3'- gaCGGGcACCuCUUgUGCUGC-UGCUG- -5'
16030 5' -55.5 NC_004065.1 + 131150 0.66 0.965246
Target:  5'- -aGCgCGUGG-----GCGACGACGACc -3'
miRNA:   3'- gaCGgGCACCucuugUGCUGCUGCUG- -5'
16030 5' -55.5 NC_004065.1 + 201197 0.66 0.973811
Target:  5'- -cGuCCCGgcucGGGcGGCGCGGCGACGuGCg -3'
miRNA:   3'- gaC-GGGCa---CCUcUUGUGCUGCUGC-UG- -5'
16030 5' -55.5 NC_004065.1 + 7084 0.66 0.965246
Target:  5'- gCUGCCCGaaGGccguGAuuuccAgACGACGACGAUc -3'
miRNA:   3'- -GACGGGCa-CCu---CU-----UgUGCUGCUGCUG- -5'
16030 5' -55.5 NC_004065.1 + 35179 0.66 0.974825
Target:  5'- gUGUCCGccgccguggucggccUGGAGAACGUGGCGGCcACc -3'
miRNA:   3'- gACGGGC---------------ACCUCUUGUGCUGCUGcUG- -5'
16030 5' -55.5 NC_004065.1 + 71963 0.66 0.973811
Target:  5'- -cGCCgGUGGAGccgGGCAgccCGGaGGCGACg -3'
miRNA:   3'- gaCGGgCACCUC---UUGU---GCUgCUGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.