miRNA display CGI


Results 1 - 20 of 150 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16030 5' -55.5 NC_004065.1 + 1798 0.67 0.946917
Target:  5'- --uCCCGgucuGAACGCGGCGGCGAUc -3'
miRNA:   3'- gacGGGCaccuCUUGUGCUGCUGCUG- -5'
16030 5' -55.5 NC_004065.1 + 4363 0.84 0.218019
Target:  5'- gCUGCgCGUGGA--GCGCGACGGCGGCg -3'
miRNA:   3'- -GACGgGCACCUcuUGUGCUGCUGCUG- -5'
16030 5' -55.5 NC_004065.1 + 5421 0.67 0.946917
Target:  5'- -gGCCgCGUGcguuGGGAACAacucccCGACGGCGAUc -3'
miRNA:   3'- gaCGG-GCAC----CUCUUGU------GCUGCUGCUG- -5'
16030 5' -55.5 NC_004065.1 + 7084 0.66 0.965246
Target:  5'- gCUGCCCGaaGGccguGAuuuccAgACGACGACGAUc -3'
miRNA:   3'- -GACGGGCa-CCu---CU-----UgUGCUGCUGCUG- -5'
16030 5' -55.5 NC_004065.1 + 14984 0.68 0.91771
Target:  5'- cCUGCagaCCGUGaGGGAGCuCGugGGUGACg -3'
miRNA:   3'- -GACG---GGCAC-CUCUUGuGCugCUGCUG- -5'
16030 5' -55.5 NC_004065.1 + 21079 0.69 0.887254
Target:  5'- gUGUCCGUaGGGGACAUGACGuacgcucgauCGGCa -3'
miRNA:   3'- gACGGGCAcCUCUUGUGCUGCu---------GCUG- -5'
16030 5' -55.5 NC_004065.1 + 24820 0.71 0.788624
Target:  5'- -aGCCCuuucgggugGUGGAGAcGCACGcggcgcccgauguugGCGGCGACg -3'
miRNA:   3'- gaCGGG---------CACCUCU-UGUGC---------------UGCUGCUG- -5'
16030 5' -55.5 NC_004065.1 + 26288 0.71 0.802616
Target:  5'- -cGaCUCGUcGGAuGAugACGACGACGAUg -3'
miRNA:   3'- gaC-GGGCA-CCU-CUugUGCUGCUGCUG- -5'
16030 5' -55.5 NC_004065.1 + 26753 0.66 0.971147
Target:  5'- -cGUcgUCGUGGAcGACgACGACGACGGa -3'
miRNA:   3'- gaCG--GGCACCUcUUG-UGCUGCUGCUg -5'
16030 5' -55.5 NC_004065.1 + 28725 0.67 0.938075
Target:  5'- cCUGUCCGaGGAGGAgACcGCGGUGGCg -3'
miRNA:   3'- -GACGGGCaCCUCUUgUGcUGCUGCUG- -5'
16030 5' -55.5 NC_004065.1 + 30127 0.68 0.93332
Target:  5'- -gGCCUGgGGAGGGCGgGugGcggaGCGACc -3'
miRNA:   3'- gaCGGGCaCCUCUUGUgCugC----UGCUG- -5'
16030 5' -55.5 NC_004065.1 + 30490 0.69 0.879831
Target:  5'- -cGCCCGgcUGGAGGcgcccggcugcgcGCACGugG-CGGCc -3'
miRNA:   3'- gaCGGGC--ACCUCU-------------UGUGCugCuGCUG- -5'
16030 5' -55.5 NC_004065.1 + 31277 0.67 0.954884
Target:  5'- -cGCCaCGgacggagaGGAGGACGuCGGCGGCGuCg -3'
miRNA:   3'- gaCGG-GCa-------CCUCUUGU-GCUGCUGCuG- -5'
16030 5' -55.5 NC_004065.1 + 31553 0.71 0.816238
Target:  5'- gCUGCUgGUGGuguucuccgacccGAACGCGgacGCGGCGACg -3'
miRNA:   3'- -GACGGgCACCu------------CUUGUGC---UGCUGCUG- -5'
16030 5' -55.5 NC_004065.1 + 33289 0.67 0.954884
Target:  5'- aCUGCCa--GGAGAACAgcgGGCG-CGACg -3'
miRNA:   3'- -GACGGgcaCCUCUUGUg--CUGCuGCUG- -5'
16030 5' -55.5 NC_004065.1 + 33427 0.68 0.912059
Target:  5'- cCUGCCUGgacGAGAuCACGG-GGCGACu -3'
miRNA:   3'- -GACGGGCac-CUCUuGUGCUgCUGCUG- -5'
16030 5' -55.5 NC_004065.1 + 35179 0.66 0.974825
Target:  5'- gUGUCCGccgccguggucggccUGGAGAACGUGGCGGCcACc -3'
miRNA:   3'- gACGGGC---------------ACCUCUUGUGCUGCUGcUG- -5'
16030 5' -55.5 NC_004065.1 + 35407 0.72 0.776102
Target:  5'- -gGCgCCGUgGGAGAGuacCGgGACGACGGCu -3'
miRNA:   3'- gaCG-GGCA-CCUCUU---GUgCUGCUGCUG- -5'
16030 5' -55.5 NC_004065.1 + 35481 0.68 0.911481
Target:  5'- gUGCCCGUGacGAcguucacGGGCACGACcggcgucuuggaGGCGACg -3'
miRNA:   3'- gACGGGCAC--CU-------CUUGUGCUG------------CUGCUG- -5'
16030 5' -55.5 NC_004065.1 + 35605 0.75 0.611882
Target:  5'- gUGUCgGUGcGGGAucCACGGCGGCGGCg -3'
miRNA:   3'- gACGGgCAC-CUCUu-GUGCUGCUGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.