miRNA display CGI


Results 1 - 20 of 150 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16030 5' -55.5 NC_004065.1 + 46914 0.7 0.827828
Target:  5'- -gGCCgCGaUGGGu--CACGACGACGACc -3'
miRNA:   3'- gaCGG-GC-ACCUcuuGUGCUGCUGCUG- -5'
16030 5' -55.5 NC_004065.1 + 168635 0.72 0.757808
Target:  5'- gUGCCgCGggcGGAGccGGCGCGGCGACGuCg -3'
miRNA:   3'- gACGG-GCa--CCUC--UUGUGCUGCUGCuG- -5'
16030 5' -55.5 NC_004065.1 + 154146 0.72 0.776102
Target:  5'- -cGcCCCG-GGcGGugGCGGCGGCGGCg -3'
miRNA:   3'- gaC-GGGCaCCuCUugUGCUGCUGCUG- -5'
16030 5' -55.5 NC_004065.1 + 152653 0.71 0.785072
Target:  5'- -cGCUCGUcaucGGAGccaACGGCGGCGACg -3'
miRNA:   3'- gaCGGGCA----CCUCuugUGCUGCUGCUG- -5'
16030 5' -55.5 NC_004065.1 + 24820 0.71 0.788624
Target:  5'- -aGCCCuuucgggugGUGGAGAcGCACGcggcgcccgauguugGCGGCGACg -3'
miRNA:   3'- gaCGGG---------CACCUCU-UGUGC---------------UGCUGCUG- -5'
16030 5' -55.5 NC_004065.1 + 151093 0.71 0.802616
Target:  5'- -gGCCUgGUGGcgcccGAGCuCGGCGACGACg -3'
miRNA:   3'- gaCGGG-CACCu----CUUGuGCUGCUGCUG- -5'
16030 5' -55.5 NC_004065.1 + 98204 0.71 0.802616
Target:  5'- aCUGUUguUGGAGGACACGAgCGAgGACu -3'
miRNA:   3'- -GACGGgcACCUCUUGUGCU-GCUgCUG- -5'
16030 5' -55.5 NC_004065.1 + 26288 0.71 0.802616
Target:  5'- -cGaCUCGUcGGAuGAugACGACGACGAUg -3'
miRNA:   3'- gaC-GGGCA-CCU-CUugUGCUGCUGCUG- -5'
16030 5' -55.5 NC_004065.1 + 140764 0.71 0.819582
Target:  5'- uCUGgaaCGUGGuGGGgACGACGAUGACg -3'
miRNA:   3'- -GACgg-GCACCuCUUgUGCUGCUGCUG- -5'
16030 5' -55.5 NC_004065.1 + 150899 0.72 0.747564
Target:  5'- -aGUCCGUcGGGAACAaggggucCGACGGCGGCu -3'
miRNA:   3'- gaCGGGCAcCUCUUGU-------GCUGCUGCUG- -5'
16030 5' -55.5 NC_004065.1 + 149036 0.72 0.739097
Target:  5'- gCUGaCCuCG-GGAGcGgGCGACGACGGCg -3'
miRNA:   3'- -GAC-GG-GCaCCUCuUgUGCUGCUGCUG- -5'
16030 5' -55.5 NC_004065.1 + 70685 0.72 0.739097
Target:  5'- gCUGCCCGaGGGc--CugGACGugGACa -3'
miRNA:   3'- -GACGGGCaCCUcuuGugCUGCugCUG- -5'
16030 5' -55.5 NC_004065.1 + 65835 0.78 0.44157
Target:  5'- aUGCCgGcGGAGAuccGCGCGcACGACGACa -3'
miRNA:   3'- gACGGgCaCCUCU---UGUGC-UGCUGCUG- -5'
16030 5' -55.5 NC_004065.1 + 134857 0.76 0.562691
Target:  5'- -gGCCC-UGGAcccuGCACGGCGGCGGCg -3'
miRNA:   3'- gaCGGGcACCUcu--UGUGCUGCUGCUG- -5'
16030 5' -55.5 NC_004065.1 + 81417 0.75 0.569527
Target:  5'- -gGCCCGUcccucguccccggcGGAGAACugGACGGgGAUc -3'
miRNA:   3'- gaCGGGCA--------------CCUCUUGugCUGCUgCUG- -5'
16030 5' -55.5 NC_004065.1 + 68570 0.75 0.592117
Target:  5'- -gGCCUG-GcGAGcAACGCGGCGGCGGCg -3'
miRNA:   3'- gaCGGGCaC-CUC-UUGUGCUGCUGCUG- -5'
16030 5' -55.5 NC_004065.1 + 35605 0.75 0.611882
Target:  5'- gUGUCgGUGcGGGAucCACGGCGGCGGCg -3'
miRNA:   3'- gACGGgCAC-CUCUu-GUGCUGCUGCUG- -5'
16030 5' -55.5 NC_004065.1 + 112027 0.74 0.621789
Target:  5'- -cGCCCGacGAGG--ACGACGACGACa -3'
miRNA:   3'- gaCGGGCacCUCUugUGCUGCUGCUG- -5'
16030 5' -55.5 NC_004065.1 + 71284 0.74 0.641618
Target:  5'- --aCCUGaaGAGAGCACGACGGCGGCc -3'
miRNA:   3'- gacGGGCacCUCUUGUGCUGCUGCUG- -5'
16030 5' -55.5 NC_004065.1 + 68287 0.73 0.710395
Target:  5'- gCUGUUCGaGGAGGGCuCGGCGACGGa -3'
miRNA:   3'- -GACGGGCaCCUCUUGuGCUGCUGCUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.