miRNA display CGI


Results 1 - 20 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16033 3' -52.5 NC_004065.1 + 128447 0.66 0.990743
Target:  5'- -aGCGCG-GCGGAGGcguccGCgGGCGCGAu -3'
miRNA:   3'- ugCGUGUaCGCUUUCu----UGaCCGCGUU- -5'
16033 3' -52.5 NC_004065.1 + 102911 0.66 0.990743
Target:  5'- cCGCG-AUGgGGGAGAACUGGacgGCGAc -3'
miRNA:   3'- uGCGUgUACgCUUUCUUGACCg--CGUU- -5'
16033 3' -52.5 NC_004065.1 + 36747 0.66 0.990743
Target:  5'- uACGCGa--GCGuGGAGGAC-GGCGCAGg -3'
miRNA:   3'- -UGCGUguaCGC-UUUCUUGaCCGCGUU- -5'
16033 3' -52.5 NC_004065.1 + 90938 0.66 0.989448
Target:  5'- cACGCAgGUGCGAGAcGAGacgGGC-CAGa -3'
miRNA:   3'- -UGCGUgUACGCUUU-CUUga-CCGcGUU- -5'
16033 3' -52.5 NC_004065.1 + 216021 0.66 0.989448
Target:  5'- -aGCGaGUGUGAAauggGGaAACUGGCGCGu -3'
miRNA:   3'- ugCGUgUACGCUU----UC-UUGACCGCGUu -5'
16033 3' -52.5 NC_004065.1 + 77410 0.66 0.989448
Target:  5'- gGCGCACAUgGCGGu--GACccgGGCGCu- -3'
miRNA:   3'- -UGCGUGUA-CGCUuucUUGa--CCGCGuu -5'
16033 3' -52.5 NC_004065.1 + 33256 0.66 0.989448
Target:  5'- uCGCugAggugGCGGAucuuGGGCaGGCGCAGc -3'
miRNA:   3'- uGCGugUa---CGCUUu---CUUGaCCGCGUU- -5'
16033 3' -52.5 NC_004065.1 + 147344 0.66 0.989173
Target:  5'- cACGCACAUGCugcgccucucggccaGGAGGcACgagacccgcuucugGGCGCAGa -3'
miRNA:   3'- -UGCGUGUACG---------------CUUUCuUGa-------------CCGCGUU- -5'
16033 3' -52.5 NC_004065.1 + 139332 0.66 0.986272
Target:  5'- aGCGCaggaaacGCAUGCGGGAGAccaucgAUUcGGCGCu- -3'
miRNA:   3'- -UGCG-------UGUACGCUUUCU------UGA-CCGCGuu -5'
16033 3' -52.5 NC_004065.1 + 135668 0.66 0.984706
Target:  5'- aACGCGCGU-CGggGG-GCUcGCGCAGa -3'
miRNA:   3'- -UGCGUGUAcGCuuUCuUGAcCGCGUU- -5'
16033 3' -52.5 NC_004065.1 + 87611 0.67 0.98281
Target:  5'- gGCGCGCcggcagGCGAAAGAugGCccGCGCGAg -3'
miRNA:   3'- -UGCGUGua----CGCUUUCU--UGacCGCGUU- -5'
16033 3' -52.5 NC_004065.1 + 71551 0.67 0.98281
Target:  5'- gACGgACGUGUucGGGGAgaGGCGCGu -3'
miRNA:   3'- -UGCgUGUACGcuUUCUUgaCCGCGUu -5'
16033 3' -52.5 NC_004065.1 + 97042 0.67 0.98281
Target:  5'- cUGCGCGUGCGAGcucuccuGGugUGGUgGCGAu -3'
miRNA:   3'- uGCGUGUACGCUUu------CUugACCG-CGUU- -5'
16033 3' -52.5 NC_004065.1 + 139620 0.67 0.98281
Target:  5'- gGCGCAgAUGCGGAGcGG--UGGCGUg- -3'
miRNA:   3'- -UGCGUgUACGCUUU-CUugACCGCGuu -5'
16033 3' -52.5 NC_004065.1 + 186564 0.67 0.980742
Target:  5'- cACGUGCugcgGCGGAuGAugUGGCuGCGAc -3'
miRNA:   3'- -UGCGUGua--CGCUUuCUugACCG-CGUU- -5'
16033 3' -52.5 NC_004065.1 + 108667 0.67 0.980742
Target:  5'- gGCGCcCGUGCGGAuGGAccuGCUGuGCGUg- -3'
miRNA:   3'- -UGCGuGUACGCUU-UCU---UGAC-CGCGuu -5'
16033 3' -52.5 NC_004065.1 + 201521 0.67 0.978494
Target:  5'- -aGCAguccCAUGCGAcGGAGCUccgcGGCGCu- -3'
miRNA:   3'- ugCGU----GUACGCUuUCUUGA----CCGCGuu -5'
16033 3' -52.5 NC_004065.1 + 26338 0.67 0.978494
Target:  5'- uGCGUAUGUGUGAuguguaauuauGAGGGCucUGGCGCu- -3'
miRNA:   3'- -UGCGUGUACGCU-----------UUCUUG--ACCGCGuu -5'
16033 3' -52.5 NC_004065.1 + 28868 0.67 0.978494
Target:  5'- gGCGCugcuGCGUGaCG-AGGAcuGCUGGCGCc- -3'
miRNA:   3'- -UGCG----UGUAC-GCuUUCU--UGACCGCGuu -5'
16033 3' -52.5 NC_004065.1 + 200531 0.67 0.978494
Target:  5'- cGCGCACAgggcguccaugGCGAGGGcGACgGGCgGCAGc -3'
miRNA:   3'- -UGCGUGUa----------CGCUUUC-UUGaCCG-CGUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.