miRNA display CGI


Results 1 - 20 of 172 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16033 5' -59.4 NC_004065.1 + 122565 0.65 0.87289
Target:  5'- aGCCUUCcuccugcGGCAGaCGCCCgaCCACGaccuccUGGUg -3'
miRNA:   3'- -CGGAAG-------UCGUC-GUGGGg-GGUGU------GCCG- -5'
16033 5' -59.4 NC_004065.1 + 120769 0.65 0.87289
Target:  5'- uCCUUCcacgguacgaucuGGCAGCucaaCCCCGgACGGUa -3'
miRNA:   3'- cGGAAG-------------UCGUCGugg-GGGGUgUGCCG- -5'
16033 5' -59.4 NC_004065.1 + 101589 0.66 0.869388
Target:  5'- cGCCUccgccgcgcucagacUCgguGGCGGCGCCgCCgCCGCugccgcuCGGCc -3'
miRNA:   3'- -CGGA---------------AG---UCGUCGUGG-GG-GGUGu------GCCG- -5'
16033 5' -59.4 NC_004065.1 + 202167 0.66 0.866553
Target:  5'- gGCCUUguGCuGCGCCgCggugauguUCAgGCGGCc -3'
miRNA:   3'- -CGGAAguCGuCGUGGgG--------GGUgUGCCG- -5'
16033 5' -59.4 NC_004065.1 + 80319 0.66 0.866553
Target:  5'- gGCCggcgCGGCcGCGgCCCCC---CGGCg -3'
miRNA:   3'- -CGGaa--GUCGuCGUgGGGGGuguGCCG- -5'
16033 5' -59.4 NC_004065.1 + 118094 0.66 0.864405
Target:  5'- aCCgcgaCGGCGGCGCCCauggcgucucucguCgCCGCGCGGa -3'
miRNA:   3'- cGGaa--GUCGUCGUGGG--------------G-GGUGUGCCg -5'
16033 5' -59.4 NC_004065.1 + 59566 0.66 0.859329
Target:  5'- gGUCUgcggCGGCAGCgaagGCgCCUCCG-GCGGCg -3'
miRNA:   3'- -CGGAa---GUCGUCG----UG-GGGGGUgUGCCG- -5'
16033 5' -59.4 NC_004065.1 + 126715 0.66 0.859329
Target:  5'- cGCCUgCGGCGaccGCugaGCCUgCCGcCGCGGCc -3'
miRNA:   3'- -CGGAaGUCGU---CG---UGGGgGGU-GUGCCG- -5'
16033 5' -59.4 NC_004065.1 + 35187 0.66 0.859329
Target:  5'- cGCCguggUCGGCcuggagaacguGGCGgCCaCCGcCACGGCg -3'
miRNA:   3'- -CGGa---AGUCG-----------UCGUgGGgGGU-GUGCCG- -5'
16033 5' -59.4 NC_004065.1 + 225533 0.66 0.859328
Target:  5'- cGCaCgcgCAGCuGCugCCCUCA-AUGGCg -3'
miRNA:   3'- -CG-Gaa-GUCGuCGugGGGGGUgUGCCG- -5'
16033 5' -59.4 NC_004065.1 + 56648 0.66 0.859328
Target:  5'- gGCC----GCGGCACCCUUCACcguCGGUu -3'
miRNA:   3'- -CGGaaguCGUCGUGGGGGGUGu--GCCG- -5'
16033 5' -59.4 NC_004065.1 + 184181 0.66 0.858596
Target:  5'- gGCCaUCGcgucccguGCGGCcgguccgauacauGCCCaCCCGCacGCGGCg -3'
miRNA:   3'- -CGGaAGU--------CGUCG-------------UGGG-GGGUG--UGCCG- -5'
16033 5' -59.4 NC_004065.1 + 28428 0.66 0.858596
Target:  5'- gGUCUUCgacgacucgGGCAGCAUCUUCUAUcuaucgcugaucaGCGGCg -3'
miRNA:   3'- -CGGAAG---------UCGUCGUGGGGGGUG-------------UGCCG- -5'
16033 5' -59.4 NC_004065.1 + 199024 0.66 0.851919
Target:  5'- aGCUcgaaCAGUGGCucaGCgCCCgACGCGGCg -3'
miRNA:   3'- -CGGaa--GUCGUCG---UGgGGGgUGUGCCG- -5'
16033 5' -59.4 NC_004065.1 + 188115 0.66 0.851919
Target:  5'- cGCCacCAGCuuGCACCCCUC-CGgGGa -3'
miRNA:   3'- -CGGaaGUCGu-CGUGGGGGGuGUgCCg -5'
16033 5' -59.4 NC_004065.1 + 129886 0.66 0.851919
Target:  5'- uGCCgcgcgcugCGGCGG-ACCCUgaucggggCCugGCGGCa -3'
miRNA:   3'- -CGGaa------GUCGUCgUGGGG--------GGugUGCCG- -5'
16033 5' -59.4 NC_004065.1 + 80110 0.66 0.851919
Target:  5'- uGCCgagCcGC-GCGCCCCUCAUccaacCGGCa -3'
miRNA:   3'- -CGGaa-GuCGuCGUGGGGGGUGu----GCCG- -5'
16033 5' -59.4 NC_004065.1 + 53311 0.66 0.851918
Target:  5'- gGCCccacaCAGCAGCACCacggaCaaaaC-CACGGCg -3'
miRNA:   3'- -CGGaa---GUCGUCGUGGg----Gg---GuGUGCCG- -5'
16033 5' -59.4 NC_004065.1 + 25467 0.66 0.851918
Target:  5'- aGCagaCGcGCAGCACCUCCCGCcgcccgacgaGGCg -3'
miRNA:   3'- -CGgaaGU-CGUCGUGGGGGGUGug--------CCG- -5'
16033 5' -59.4 NC_004065.1 + 201063 0.66 0.851918
Target:  5'- uCCgugUC-GUAGCGCCCCgCCuC-CGGCg -3'
miRNA:   3'- cGGa--AGuCGUCGUGGGG-GGuGuGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.