miRNA display CGI


Results 1 - 20 of 205 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16035 3' -55.8 NC_004065.1 + 185211 0.66 0.968294
Target:  5'- ---cGCGGUGGUGGCGCGGaGaauCCg -3'
miRNA:   3'- cuuaCGCUGCCACUGCGCCgCgauGG- -5'
16035 3' -55.8 NC_004065.1 + 208330 0.66 0.968294
Target:  5'- cGAuUGUccgGACGGcGACuGCGuCGCUACCu -3'
miRNA:   3'- -CUuACG---CUGCCaCUG-CGCcGCGAUGG- -5'
16035 3' -55.8 NC_004065.1 + 77832 0.66 0.968294
Target:  5'- --uUGCGGaaccaGGcuccgGACGCGGCGUggGCUc -3'
miRNA:   3'- cuuACGCUg----CCa----CUGCGCCGCGa-UGG- -5'
16035 3' -55.8 NC_004065.1 + 96585 0.66 0.968294
Target:  5'- ---cGCGACGcGUGGCGa--CGCUGCa -3'
miRNA:   3'- cuuaCGCUGC-CACUGCgccGCGAUGg -5'
16035 3' -55.8 NC_004065.1 + 169380 0.66 0.968294
Target:  5'- ---cGCG-UGcGUGGCGCGGgGCaacacgGCCg -3'
miRNA:   3'- cuuaCGCuGC-CACUGCGCCgCGa-----UGG- -5'
16035 3' -55.8 NC_004065.1 + 112914 0.66 0.968294
Target:  5'- aGGUGCGACaccagGGCGCGGCacGCUcgcgaACCc -3'
miRNA:   3'- cUUACGCUGcca--CUGCGCCG--CGA-----UGG- -5'
16035 3' -55.8 NC_004065.1 + 96134 0.66 0.967099
Target:  5'- ---cGCGAgGGUGGCccgucguuccgccCGGCGC-GCCg -3'
miRNA:   3'- cuuaCGCUgCCACUGc------------GCCGCGaUGG- -5'
16035 3' -55.8 NC_004065.1 + 121131 0.66 0.965246
Target:  5'- cGAGUGCGAgcaGGagagGACGUG-CGCUAUg -3'
miRNA:   3'- -CUUACGCUg--CCa---CUGCGCcGCGAUGg -5'
16035 3' -55.8 NC_004065.1 + 195070 0.66 0.965246
Target:  5'- aAGUGCaGGuCGGgcgagcGCGCGGCGCagACCc -3'
miRNA:   3'- cUUACG-CU-GCCac----UGCGCCGCGa-UGG- -5'
16035 3' -55.8 NC_004065.1 + 101257 0.66 0.965246
Target:  5'- ---gGCGACGGcGcccucaACGCuGCcGCUGCCg -3'
miRNA:   3'- cuuaCGCUGCCaC------UGCGcCG-CGAUGG- -5'
16035 3' -55.8 NC_004065.1 + 63847 0.66 0.965246
Target:  5'- uGGAUGCucagacacaucGCGGUgcaGACGuCGGCGCcgcUGCCg -3'
miRNA:   3'- -CUUACGc----------UGCCA---CUGC-GCCGCG---AUGG- -5'
16035 3' -55.8 NC_004065.1 + 33803 0.66 0.965246
Target:  5'- -cAUGCGGacgUGGgacGACGCGGacaaGCUgGCCa -3'
miRNA:   3'- cuUACGCU---GCCa--CUGCGCCg---CGA-UGG- -5'
16035 3' -55.8 NC_004065.1 + 186565 0.66 0.965246
Target:  5'- aGGUGCGACaacGUcuacaccgagGACgGCGGCGCU-CCg -3'
miRNA:   3'- cUUACGCUGc--CA----------CUG-CGCCGCGAuGG- -5'
16035 3' -55.8 NC_004065.1 + 208883 0.66 0.963322
Target:  5'- cGGUGCG-CGGUGACGgacugaguucuccgGGCGCagcagaaagUGCCa -3'
miRNA:   3'- cUUACGCuGCCACUGCg-------------CCGCG---------AUGG- -5'
16035 3' -55.8 NC_004065.1 + 225132 0.66 0.961999
Target:  5'- uGAUGgGcuCGG-GACGCGGaCGCU-CCu -3'
miRNA:   3'- cUUACgCu-GCCaCUGCGCC-GCGAuGG- -5'
16035 3' -55.8 NC_004065.1 + 102973 0.66 0.961999
Target:  5'- ---cGCG-CGGUaGuaguCGCGGCGCccGCCc -3'
miRNA:   3'- cuuaCGCuGCCA-Cu---GCGCCGCGa-UGG- -5'
16035 3' -55.8 NC_004065.1 + 80309 0.66 0.961999
Target:  5'- uGAGUcCGAgGGccGGCGCGGcCGCgGCCc -3'
miRNA:   3'- -CUUAcGCUgCCa-CUGCGCC-GCGaUGG- -5'
16035 3' -55.8 NC_004065.1 + 154696 0.66 0.961999
Target:  5'- cGAAcGCGACGG--ACGCcGCGuCUACUg -3'
miRNA:   3'- -CUUaCGCUGCCacUGCGcCGC-GAUGG- -5'
16035 3' -55.8 NC_004065.1 + 126781 0.66 0.961999
Target:  5'- -uGUGUGAagagGACGCGaGCaGCUGCCu -3'
miRNA:   3'- cuUACGCUgccaCUGCGC-CG-CGAUGG- -5'
16035 3' -55.8 NC_004065.1 + 187399 0.66 0.961999
Target:  5'- ---cGCGgcGCGGUGugGCGucgagggcgaGCGC-ACCc -3'
miRNA:   3'- cuuaCGC--UGCCACugCGC----------CGCGaUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.