Results 1 - 20 of 205 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
16035 | 3' | -55.8 | NC_004065.1 | + | 138553 | 0.66 | 0.954884 |
Target: 5'- cGAGcgGCGGCGGacUGACGgCGaCGgUGCCg -3' miRNA: 3'- -CUUa-CGCUGCC--ACUGC-GCcGCgAUGG- -5' |
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16035 | 3' | -55.8 | NC_004065.1 | + | 208330 | 0.66 | 0.968294 |
Target: 5'- cGAuUGUccgGACGGcGACuGCGuCGCUACCu -3' miRNA: 3'- -CUuACG---CUGCCaCUG-CGCcGCGAUGG- -5' |
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16035 | 3' | -55.8 | NC_004065.1 | + | 59925 | 0.66 | 0.954884 |
Target: 5'- -----aGACGuUGuCGCGGCGCgGCCa -3' miRNA: 3'- cuuacgCUGCcACuGCGCCGCGaUGG- -5' |
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16035 | 3' | -55.8 | NC_004065.1 | + | 200578 | 0.66 | 0.958546 |
Target: 5'- cGggUGgaGAagGGUGGuCGCGGCGUUcuugACCu -3' miRNA: 3'- -CuuACg-CUg-CCACU-GCGCCGCGA----UGG- -5' |
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16035 | 3' | -55.8 | NC_004065.1 | + | 121131 | 0.66 | 0.965246 |
Target: 5'- cGAGUGCGAgcaGGagagGACGUG-CGCUAUg -3' miRNA: 3'- -CUUACGCUg--CCa---CUGCGCcGCGAUGg -5' |
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16035 | 3' | -55.8 | NC_004065.1 | + | 29391 | 0.66 | 0.958546 |
Target: 5'- uGggUGgGAUGGUuuuGAUGUaGGCGCcgguggGCCa -3' miRNA: 3'- -CuuACgCUGCCA---CUGCG-CCGCGa-----UGG- -5' |
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16035 | 3' | -55.8 | NC_004065.1 | + | 35583 | 0.66 | 0.958546 |
Target: 5'- ---gGCGGaauCGGUGGCGuCGGCGgUGUCg -3' miRNA: 3'- cuuaCGCU---GCCACUGC-GCCGCgAUGG- -5' |
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16035 | 3' | -55.8 | NC_004065.1 | + | 225132 | 0.66 | 0.961999 |
Target: 5'- uGAUGgGcuCGG-GACGCGGaCGCU-CCu -3' miRNA: 3'- cUUACgCu-GCCaCUGCGCC-GCGAuGG- -5' |
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16035 | 3' | -55.8 | NC_004065.1 | + | 102973 | 0.66 | 0.961999 |
Target: 5'- ---cGCG-CGGUaGuaguCGCGGCGCccGCCc -3' miRNA: 3'- cuuaCGCuGCCA-Cu---GCGCCGCGa-UGG- -5' |
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16035 | 3' | -55.8 | NC_004065.1 | + | 71684 | 0.66 | 0.958189 |
Target: 5'- ---aGCGGCGGcGGCaacgggaGCGGCGCguCCu -3' miRNA: 3'- cuuaCGCUGCCaCUG-------CGCCGCGauGG- -5' |
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16035 | 3' | -55.8 | NC_004065.1 | + | 62473 | 0.66 | 0.954884 |
Target: 5'- ---gGCGACGGcagGAgcggcCGCGGCGgUAgCg -3' miRNA: 3'- cuuaCGCUGCCa--CU-----GCGCCGCgAUgG- -5' |
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16035 | 3' | -55.8 | NC_004065.1 | + | 69409 | 0.66 | 0.954884 |
Target: 5'- --cUGcCGACGG-GGCGCcaGGUGCgcGCCg -3' miRNA: 3'- cuuAC-GCUGCCaCUGCG--CCGCGa-UGG- -5' |
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16035 | 3' | -55.8 | NC_004065.1 | + | 68238 | 0.66 | 0.954884 |
Target: 5'- ---cGuCGGCGGUGACGaggaCGGaccgGCUGCUg -3' miRNA: 3'- cuuaC-GCUGCCACUGC----GCCg---CGAUGG- -5' |
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16035 | 3' | -55.8 | NC_004065.1 | + | 74604 | 0.66 | 0.958546 |
Target: 5'- ---gGUGGCGGUGGCGgccgaguuccCGGaaccgccgccacCGCUACCc -3' miRNA: 3'- cuuaCGCUGCCACUGC----------GCC------------GCGAUGG- -5' |
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16035 | 3' | -55.8 | NC_004065.1 | + | 199515 | 0.66 | 0.954884 |
Target: 5'- ---cGCGGCGGccgccACGUGcGCGCaGCCg -3' miRNA: 3'- cuuaCGCUGCCac---UGCGC-CGCGaUGG- -5' |
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16035 | 3' | -55.8 | NC_004065.1 | + | 52666 | 0.66 | 0.958546 |
Target: 5'- ---cGCuGGCGGUGGCGgUGGCGgaUGCg -3' miRNA: 3'- cuuaCG-CUGCCACUGC-GCCGCg-AUGg -5' |
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16035 | 3' | -55.8 | NC_004065.1 | + | 186565 | 0.66 | 0.965246 |
Target: 5'- aGGUGCGACaacGUcuacaccgagGACgGCGGCGCU-CCg -3' miRNA: 3'- cUUACGCUGc--CA----------CUG-CGCCGCGAuGG- -5' |
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16035 | 3' | -55.8 | NC_004065.1 | + | 68767 | 0.66 | 0.954884 |
Target: 5'- ---cGCGGCGGUGcugGCGGC-CUucaagGCCg -3' miRNA: 3'- cuuaCGCUGCCACug-CGCCGcGA-----UGG- -5' |
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16035 | 3' | -55.8 | NC_004065.1 | + | 96585 | 0.66 | 0.968294 |
Target: 5'- ---cGCGACGcGUGGCGa--CGCUGCa -3' miRNA: 3'- cuuaCGCUGC-CACUGCgccGCGAUGg -5' |
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16035 | 3' | -55.8 | NC_004065.1 | + | 195070 | 0.66 | 0.965246 |
Target: 5'- aAGUGCaGGuCGGgcgagcGCGCGGCGCagACCc -3' miRNA: 3'- cUUACG-CU-GCCac----UGCGCCGCGa-UGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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