miRNA display CGI


Results 1 - 20 of 205 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16035 3' -55.8 NC_004065.1 + 71733 1.12 0.003035
Target:  5'- aGAAUGCGACGGUGACGCGGCGCUACCg -3'
miRNA:   3'- -CUUACGCUGCCACUGCGCCGCGAUGG- -5'
16035 3' -55.8 NC_004065.1 + 131870 0.83 0.223256
Target:  5'- ---gGCGGCGGUGGCgGCGGCGaCUAUCa -3'
miRNA:   3'- cuuaCGCUGCCACUG-CGCCGC-GAUGG- -5'
16035 3' -55.8 NC_004065.1 + 100791 0.79 0.351529
Target:  5'- ---cGCG-CGGUGACGUGGauguaGCUGCCa -3'
miRNA:   3'- cuuaCGCuGCCACUGCGCCg----CGAUGG- -5'
16035 3' -55.8 NC_004065.1 + 48104 0.79 0.351529
Target:  5'- uGGcgGCGGCGGUGGCgGCGGCGgUgggACCu -3'
miRNA:   3'- -CUuaCGCUGCCACUG-CGCCGCgA---UGG- -5'
16035 3' -55.8 NC_004065.1 + 139849 0.79 0.382729
Target:  5'- gGAGgcggGCGACGGcgGAgGCGGCGgaGCCg -3'
miRNA:   3'- -CUUa---CGCUGCCa-CUgCGCCGCgaUGG- -5'
16035 3' -55.8 NC_004065.1 + 44538 0.78 0.399005
Target:  5'- ---gGgGACGGUG--GCGGCGCUGCCu -3'
miRNA:   3'- cuuaCgCUGCCACugCGCCGCGAUGG- -5'
16035 3' -55.8 NC_004065.1 + 31519 0.78 0.407307
Target:  5'- -cGUGCGAC-GUGcCGCGGgGCUACCc -3'
miRNA:   3'- cuUACGCUGcCACuGCGCCgCGAUGG- -5'
16035 3' -55.8 NC_004065.1 + 173380 0.78 0.415717
Target:  5'- cGAcgGUGAagGGUGcCGCGGCcGCUGCCa -3'
miRNA:   3'- -CUuaCGCUg-CCACuGCGCCG-CGAUGG- -5'
16035 3' -55.8 NC_004065.1 + 66601 0.78 0.432851
Target:  5'- ---gGCGGCGGccacCGCGGCGUUGCCg -3'
miRNA:   3'- cuuaCGCUGCCacu-GCGCCGCGAUGG- -5'
16035 3' -55.8 NC_004065.1 + 201529 0.77 0.44157
Target:  5'- -cAUGCGACGGagcucCGCGGCGCUgucgGCCa -3'
miRNA:   3'- cuUACGCUGCCacu--GCGCCGCGA----UGG- -5'
16035 3' -55.8 NC_004065.1 + 216216 0.77 0.450389
Target:  5'- ---cGUGACGuaaaGGCGCGGCGCUACUa -3'
miRNA:   3'- cuuaCGCUGCca--CUGCGCCGCGAUGG- -5'
16035 3' -55.8 NC_004065.1 + 195819 0.77 0.450389
Target:  5'- cGggUGgGACGGUGAgaCGGCGCUcgaGCCc -3'
miRNA:   3'- -CuuACgCUGCCACUgcGCCGCGA---UGG- -5'
16035 3' -55.8 NC_004065.1 + 225384 0.77 0.468311
Target:  5'- ---cGCGGCGGgGGCGCuGGCGCUgaugguGCCg -3'
miRNA:   3'- cuuaCGCUGCCaCUGCG-CCGCGA------UGG- -5'
16035 3' -55.8 NC_004065.1 + 28996 0.77 0.477408
Target:  5'- ---gGCGGCGGUGGCGaGGCGCcGCg -3'
miRNA:   3'- cuuaCGCUGCCACUGCgCCGCGaUGg -5'
16035 3' -55.8 NC_004065.1 + 201319 0.75 0.552966
Target:  5'- aGAGgaUGAUGGUGGCGgGGUGCUGCUu -3'
miRNA:   3'- -CUUacGCUGCCACUGCgCCGCGAUGG- -5'
16035 3' -55.8 NC_004065.1 + 29499 0.75 0.582273
Target:  5'- ---gGCGuuccagguacuCGGUGACGcCGGCGCUGCa -3'
miRNA:   3'- cuuaCGCu----------GCCACUGC-GCCGCGAUGg -5'
16035 3' -55.8 NC_004065.1 + 205432 0.75 0.591132
Target:  5'- cGGcgGCGGCGGUGGCGgCGacgacacGCGCggACCg -3'
miRNA:   3'- -CUuaCGCUGCCACUGC-GC-------CGCGa-UGG- -5'
16035 3' -55.8 NC_004065.1 + 162421 0.75 0.592117
Target:  5'- cGGUGCGACGG--ACGCcGCGCUAUCu -3'
miRNA:   3'- cUUACGCUGCCacUGCGcCGCGAUGG- -5'
16035 3' -55.8 NC_004065.1 + 141642 0.75 0.592117
Target:  5'- ---gGCGACGGagGGCgGUGGCGgUGCCg -3'
miRNA:   3'- cuuaCGCUGCCa-CUG-CGCCGCgAUGG- -5'
16035 3' -55.8 NC_004065.1 + 199224 0.74 0.601989
Target:  5'- ---cGCGACGGUGACGacaGGUGCa--- -3'
miRNA:   3'- cuuaCGCUGCCACUGCg--CCGCGaugg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.