miRNA display CGI


Results 21 - 40 of 205 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16035 3' -55.8 NC_004065.1 + 225132 0.66 0.961999
Target:  5'- uGAUGgGcuCGG-GACGCGGaCGCU-CCu -3'
miRNA:   3'- cUUACgCu-GCCaCUGCGCC-GCGAuGG- -5'
16035 3' -55.8 NC_004065.1 + 52666 0.66 0.958546
Target:  5'- ---cGCuGGCGGUGGCGgUGGCGgaUGCg -3'
miRNA:   3'- cuuaCG-CUGCCACUGC-GCCGCg-AUGg -5'
16035 3' -55.8 NC_004065.1 + 35583 0.66 0.958546
Target:  5'- ---gGCGGaauCGGUGGCGuCGGCGgUGUCg -3'
miRNA:   3'- cuuaCGCU---GCCACUGC-GCCGCgAUGG- -5'
16035 3' -55.8 NC_004065.1 + 74604 0.66 0.958546
Target:  5'- ---gGUGGCGGUGGCGgccgaguuccCGGaaccgccgccacCGCUACCc -3'
miRNA:   3'- cuuaCGCUGCCACUGC----------GCC------------GCGAUGG- -5'
16035 3' -55.8 NC_004065.1 + 29391 0.66 0.958546
Target:  5'- uGggUGgGAUGGUuuuGAUGUaGGCGCcgguggGCCa -3'
miRNA:   3'- -CuuACgCUGCCA---CUGCG-CCGCGa-----UGG- -5'
16035 3' -55.8 NC_004065.1 + 200578 0.66 0.958546
Target:  5'- cGggUGgaGAagGGUGGuCGCGGCGUUcuugACCu -3'
miRNA:   3'- -CuuACg-CUg-CCACU-GCGCCGCGA----UGG- -5'
16035 3' -55.8 NC_004065.1 + 195669 0.66 0.958546
Target:  5'- ---aGCGGCGGaggGugGCG-UGCUugCu -3'
miRNA:   3'- cuuaCGCUGCCa--CugCGCcGCGAugG- -5'
16035 3' -55.8 NC_004065.1 + 28956 0.66 0.958546
Target:  5'- ---cGuCGcCGGaGGCGgGGCGCUACg -3'
miRNA:   3'- cuuaC-GCuGCCaCUGCgCCGCGAUGg -5'
16035 3' -55.8 NC_004065.1 + 71684 0.66 0.958189
Target:  5'- ---aGCGGCGGcGGCaacgggaGCGGCGCguCCu -3'
miRNA:   3'- cuuaCGCUGCCaCUG-------CGCCGCGauGG- -5'
16035 3' -55.8 NC_004065.1 + 106327 0.66 0.954884
Target:  5'- ---cGCaaGACGGacaagGGCGgccCGGCGCUGCUg -3'
miRNA:   3'- cuuaCG--CUGCCa----CUGC---GCCGCGAUGG- -5'
16035 3' -55.8 NC_004065.1 + 59925 0.66 0.954884
Target:  5'- -----aGACGuUGuCGCGGCGCgGCCa -3'
miRNA:   3'- cuuacgCUGCcACuGCGCCGCGaUGG- -5'
16035 3' -55.8 NC_004065.1 + 62473 0.66 0.954884
Target:  5'- ---gGCGACGGcagGAgcggcCGCGGCGgUAgCg -3'
miRNA:   3'- cuuaCGCUGCCa--CU-----GCGCCGCgAUgG- -5'
16035 3' -55.8 NC_004065.1 + 69409 0.66 0.954884
Target:  5'- --cUGcCGACGG-GGCGCcaGGUGCgcGCCg -3'
miRNA:   3'- cuuAC-GCUGCCaCUGCG--CCGCGa-UGG- -5'
16035 3' -55.8 NC_004065.1 + 138553 0.66 0.954884
Target:  5'- cGAGcgGCGGCGGacUGACGgCGaCGgUGCCg -3'
miRNA:   3'- -CUUa-CGCUGCC--ACUGC-GCcGCgAUGG- -5'
16035 3' -55.8 NC_004065.1 + 199515 0.66 0.954884
Target:  5'- ---cGCGGCGGccgccACGUGcGCGCaGCCg -3'
miRNA:   3'- cuuaCGCUGCCac---UGCGC-CGCGaUGG- -5'
16035 3' -55.8 NC_004065.1 + 198012 0.66 0.954884
Target:  5'- ---cGCGAUGGccucgGAgGCGGuCGCggucGCCg -3'
miRNA:   3'- cuuaCGCUGCCa----CUgCGCC-GCGa---UGG- -5'
16035 3' -55.8 NC_004065.1 + 68238 0.66 0.954884
Target:  5'- ---cGuCGGCGGUGACGaggaCGGaccgGCUGCUg -3'
miRNA:   3'- cuuaC-GCUGCCACUGC----GCCg---CGAUGG- -5'
16035 3' -55.8 NC_004065.1 + 68767 0.66 0.954884
Target:  5'- ---cGCGGCGGUGcugGCGGC-CUucaagGCCg -3'
miRNA:   3'- cuuaCGCUGCCACug-CGCCGcGA-----UGG- -5'
16035 3' -55.8 NC_004065.1 + 19763 0.67 0.951009
Target:  5'- -cGUGCGGgGGUGugGgCGaCGgaGCCg -3'
miRNA:   3'- cuUACGCUgCCACugC-GCcGCgaUGG- -5'
16035 3' -55.8 NC_004065.1 + 105660 0.67 0.951009
Target:  5'- ---cGCGGCGGaUGcCGCGGUGacgAUCg -3'
miRNA:   3'- cuuaCGCUGCC-ACuGCGCCGCga-UGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.