miRNA display CGI


Results 1 - 20 of 205 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16035 3' -55.8 NC_004065.1 + 114 0.68 0.912059
Target:  5'- aGAGUGCGAUgaGGUGGCuGC-GCGCacgucACCg -3'
miRNA:   3'- -CUUACGCUG--CCACUG-CGcCGCGa----UGG- -5'
16035 3' -55.8 NC_004065.1 + 329 0.68 0.912059
Target:  5'- ---gGCGugGGUGACuuagaucgccgaGCGGaCGCgcGCCc -3'
miRNA:   3'- cuuaCGCugCCACUG------------CGCC-GCGa-UGG- -5'
16035 3' -55.8 NC_004065.1 + 727 0.67 0.93332
Target:  5'- ---cGCGAcgcCGGUGACGCaaCGCgACCa -3'
miRNA:   3'- cuuaCGCU---GCCACUGCGccGCGaUGG- -5'
16035 3' -55.8 NC_004065.1 + 1155 0.67 0.928341
Target:  5'- -uGUGCGccGCGGUGGuccccauuguguCGuCGGCGCcgcUGCCg -3'
miRNA:   3'- cuUACGC--UGCCACU------------GC-GCCGCG---AUGG- -5'
16035 3' -55.8 NC_004065.1 + 7326 0.67 0.928341
Target:  5'- ---aGcCGGUGGUaccgGACGCGGCGgaGCCg -3'
miRNA:   3'- cuuaC-GCUGCCA----CUGCGCCGCgaUGG- -5'
16035 3' -55.8 NC_004065.1 + 17296 0.67 0.946917
Target:  5'- cGggUGCGGCGGaGACaaCGGC-CUcggaGCCg -3'
miRNA:   3'- -CuuACGCUGCCaCUGc-GCCGcGA----UGG- -5'
16035 3' -55.8 NC_004065.1 + 19500 0.74 0.641618
Target:  5'- ---cGCGAUGGgGACgGCGGaacCGCUGCCg -3'
miRNA:   3'- cuuaCGCUGCCaCUG-CGCC---GCGAUGG- -5'
16035 3' -55.8 NC_004065.1 + 19560 0.72 0.757808
Target:  5'- --cUGCGugGGUgucgGugGCGGCGgUAgCg -3'
miRNA:   3'- cuuACGCugCCA----CugCGCCGCgAUgG- -5'
16035 3' -55.8 NC_004065.1 + 19763 0.67 0.951009
Target:  5'- -cGUGCGGgGGUGugGgCGaCGgaGCCg -3'
miRNA:   3'- cuUACGCUgCCACugC-GCcGCgaUGG- -5'
16035 3' -55.8 NC_004065.1 + 19840 0.72 0.757808
Target:  5'- ---aGCGGCGGUGuCG-GGacgaaGCUGCCg -3'
miRNA:   3'- cuuaCGCUGCCACuGCgCCg----CGAUGG- -5'
16035 3' -55.8 NC_004065.1 + 26368 0.7 0.843813
Target:  5'- cGAcgGCGGCGGggauACGgGGCGUUcCCc -3'
miRNA:   3'- -CUuaCGCUGCCac--UGCgCCGCGAuGG- -5'
16035 3' -55.8 NC_004065.1 + 26961 0.7 0.819582
Target:  5'- aGAUGaUGGCGGUgGugGU-GCGCUGCCu -3'
miRNA:   3'- cUUAC-GCUGCCA-CugCGcCGCGAUGG- -5'
16035 3' -55.8 NC_004065.1 + 28956 0.66 0.958546
Target:  5'- ---cGuCGcCGGaGGCGgGGCGCUACg -3'
miRNA:   3'- cuuaC-GCuGCCaCUGCgCCGCGAUGg -5'
16035 3' -55.8 NC_004065.1 + 28996 0.77 0.477408
Target:  5'- ---gGCGGCGGUGGCGaGGCGCcGCg -3'
miRNA:   3'- cuuaCGCUGCCACUGCgCCGCGaUGg -5'
16035 3' -55.8 NC_004065.1 + 29391 0.66 0.958546
Target:  5'- uGggUGgGAUGGUuuuGAUGUaGGCGCcgguggGCCa -3'
miRNA:   3'- -CuuACgCUGCCA---CUGCG-CCGCGa-----UGG- -5'
16035 3' -55.8 NC_004065.1 + 29499 0.75 0.582273
Target:  5'- ---gGCGuuccagguacuCGGUGACGcCGGCGCUGCa -3'
miRNA:   3'- cuuaCGCu----------GCCACUGC-GCCGCGAUGg -5'
16035 3' -55.8 NC_004065.1 + 29584 0.71 0.793912
Target:  5'- uGAcgGCGgccGCGGUGAcCGCGGUcCUGCa -3'
miRNA:   3'- -CUuaCGC---UGCCACU-GCGCCGcGAUGg -5'
16035 3' -55.8 NC_004065.1 + 31519 0.78 0.407307
Target:  5'- -cGUGCGAC-GUGcCGCGGgGCUACCc -3'
miRNA:   3'- cuUACGCUGcCACuGCGCCgCGAUGG- -5'
16035 3' -55.8 NC_004065.1 + 31650 0.67 0.938075
Target:  5'- ---gGCuACGG-GACGuCGGCGCUGuuCCu -3'
miRNA:   3'- cuuaCGcUGCCaCUGC-GCCGCGAU--GG- -5'
16035 3' -55.8 NC_004065.1 + 31900 0.7 0.851538
Target:  5'- cGAGaGCGGgccUGACGCGGCGCgucGCCg -3'
miRNA:   3'- -CUUaCGCUgccACUGCGCCGCGa--UGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.