miRNA display CGI


Results 1 - 20 of 205 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16035 3' -55.8 NC_004065.1 + 19840 0.72 0.757808
Target:  5'- ---aGCGGCGGUGuCG-GGacgaaGCUGCCg -3'
miRNA:   3'- cuuaCGCUGCCACuGCgCCg----CGAUGG- -5'
16035 3' -55.8 NC_004065.1 + 56626 0.73 0.681131
Target:  5'- cGGAUGUGgauGCGGUGGCaGCGGcCGCggcACCc -3'
miRNA:   3'- -CUUACGC---UGCCACUG-CGCC-GCGa--UGG- -5'
16035 3' -55.8 NC_004065.1 + 154158 0.73 0.681131
Target:  5'- uGGcgGCGGCGGcGGCgGCGGCuGUUGCUg -3'
miRNA:   3'- -CUuaCGCUGCCaCUG-CGCCG-CGAUGG- -5'
16035 3' -55.8 NC_004065.1 + 211556 0.73 0.690934
Target:  5'- ---gGCGACGGUGAuCGCGaUGgUACCg -3'
miRNA:   3'- cuuaCGCUGCCACU-GCGCcGCgAUGG- -5'
16035 3' -55.8 NC_004065.1 + 135384 0.72 0.720036
Target:  5'- ---aGgGACGGUGACGCGccggccGCGCccgACCc -3'
miRNA:   3'- cuuaCgCUGCCACUGCGC------CGCGa--UGG- -5'
16035 3' -55.8 NC_004065.1 + 76737 0.72 0.729606
Target:  5'- ----uCGGCGGggacgGGCGCGGCGCcggcgGCCu -3'
miRNA:   3'- cuuacGCUGCCa----CUGCGCCGCGa----UGG- -5'
16035 3' -55.8 NC_004065.1 + 62392 0.72 0.739097
Target:  5'- ---gGCGGCGGggGugGCGGcCGCggauCCa -3'
miRNA:   3'- cuuaCGCUGCCa-CugCGCC-GCGau--GG- -5'
16035 3' -55.8 NC_004065.1 + 182703 0.72 0.739097
Target:  5'- aGAcUGCGACGGUaccGACGCuGGuCGC-GCCu -3'
miRNA:   3'- -CUuACGCUGCCA---CUGCG-CC-GCGaUGG- -5'
16035 3' -55.8 NC_004065.1 + 69103 0.72 0.7485
Target:  5'- ---aGCauGACGGUGgacgagcaggacGCGCGGCGC-GCCg -3'
miRNA:   3'- cuuaCG--CUGCCAC------------UGCGCCGCGaUGG- -5'
16035 3' -55.8 NC_004065.1 + 200787 0.74 0.650535
Target:  5'- ---cGCGGCGGUGGCGggcgacggcgucuCGGCGCggggAUCg -3'
miRNA:   3'- cuuaCGCUGCCACUGC-------------GCCGCGa---UGG- -5'
16035 3' -55.8 NC_004065.1 + 172320 0.74 0.650535
Target:  5'- uGGAUGaCGACGGUGcagaucaGCGCGGCcCUcACCu -3'
miRNA:   3'- -CUUAC-GCUGCCAC-------UGCGCCGcGA-UGG- -5'
16035 3' -55.8 NC_004065.1 + 19500 0.74 0.641618
Target:  5'- ---cGCGAUGGgGACgGCGGaacCGCUGCCg -3'
miRNA:   3'- cuuaCGCUGCCaCUG-CGCC---GCGAUGG- -5'
16035 3' -55.8 NC_004065.1 + 48104 0.79 0.351529
Target:  5'- uGGcgGCGGCGGUGGCgGCGGCGgUgggACCu -3'
miRNA:   3'- -CUuaCGCUGCCACUG-CGCCGCgA---UGG- -5'
16035 3' -55.8 NC_004065.1 + 100791 0.79 0.351529
Target:  5'- ---cGCG-CGGUGACGUGGauguaGCUGCCa -3'
miRNA:   3'- cuuaCGCuGCCACUGCGCCg----CGAUGG- -5'
16035 3' -55.8 NC_004065.1 + 44538 0.78 0.399005
Target:  5'- ---gGgGACGGUG--GCGGCGCUGCCu -3'
miRNA:   3'- cuuaCgCUGCCACugCGCCGCGAUGG- -5'
16035 3' -55.8 NC_004065.1 + 201529 0.77 0.44157
Target:  5'- -cAUGCGACGGagcucCGCGGCGCUgucgGCCa -3'
miRNA:   3'- cuUACGCUGCCacu--GCGCCGCGA----UGG- -5'
16035 3' -55.8 NC_004065.1 + 225384 0.77 0.468311
Target:  5'- ---cGCGGCGGgGGCGCuGGCGCUgaugguGCCg -3'
miRNA:   3'- cuuaCGCUGCCaCUGCG-CCGCGA------UGG- -5'
16035 3' -55.8 NC_004065.1 + 29499 0.75 0.582273
Target:  5'- ---gGCGuuccagguacuCGGUGACGcCGGCGCUGCa -3'
miRNA:   3'- cuuaCGCu----------GCCACUGC-GCCGCGAUGg -5'
16035 3' -55.8 NC_004065.1 + 162421 0.75 0.592117
Target:  5'- cGGUGCGACGG--ACGCcGCGCUAUCu -3'
miRNA:   3'- cUUACGCUGCCacUGCGcCGCGAUGG- -5'
16035 3' -55.8 NC_004065.1 + 97070 0.74 0.631703
Target:  5'- ---gGCGAUGGUGAuugcUGCuGGUGCUGCUg -3'
miRNA:   3'- cuuaCGCUGCCACU----GCG-CCGCGAUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.