miRNA display CGI


Results 1 - 20 of 42 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16035 5' -56.7 NC_004065.1 + 32956 0.66 0.945518
Target:  5'- aUGcgGGCGUCGA-CGUCGCgGCg-- -3'
miRNA:   3'- cACaaCCGCAGCUaGCGGCGgUGaga -5'
16035 5' -56.7 NC_004065.1 + 62429 0.66 0.945518
Target:  5'- ---gUGGCGUuagcgUGAUUGuuGUCACUCUu -3'
miRNA:   3'- cacaACCGCA-----GCUAGCggCGGUGAGA- -5'
16035 5' -56.7 NC_004065.1 + 213336 0.66 0.945518
Target:  5'- -gGgaGGCuUCGAUaccaCCGCCGCUCUg -3'
miRNA:   3'- caCaaCCGcAGCUAgc--GGCGGUGAGA- -5'
16035 5' -56.7 NC_004065.1 + 149711 0.66 0.945518
Target:  5'- ----aGGCGUCGAucUCGuUCGCCGCa-- -3'
miRNA:   3'- cacaaCCGCAGCU--AGC-GGCGGUGaga -5'
16035 5' -56.7 NC_004065.1 + 110188 0.66 0.941129
Target:  5'- ----cGGCGgccgCGAcgCGCCGCCGCcCg -3'
miRNA:   3'- cacaaCCGCa---GCUa-GCGGCGGUGaGa -5'
16035 5' -56.7 NC_004065.1 + 35955 0.66 0.941129
Target:  5'- ----aGGuCGUCGGacucgCGCCGCUGCUCc -3'
miRNA:   3'- cacaaCC-GCAGCUa----GCGGCGGUGAGa -5'
16035 5' -56.7 NC_004065.1 + 98848 0.66 0.941129
Target:  5'- aUGUcagGGgGUCGGUCauauccagaCGCCGCUCUa -3'
miRNA:   3'- cACAa--CCgCAGCUAGcg-------GCGGUGAGA- -5'
16035 5' -56.7 NC_004065.1 + 98144 0.66 0.941129
Target:  5'- -gGUcUGGCGgUGAuagUCGCCGCCGC-Ca -3'
miRNA:   3'- caCA-ACCGCaGCU---AGCGGCGGUGaGa -5'
16035 5' -56.7 NC_004065.1 + 207522 0.66 0.941129
Target:  5'- ----cGGuCGUCGGuccuccUCGCCGCgCGCUCc -3'
miRNA:   3'- cacaaCC-GCAGCU------AGCGGCG-GUGAGa -5'
16035 5' -56.7 NC_004065.1 + 195843 0.66 0.926619
Target:  5'- -cGUcUGGCGcCGG-CGCCGUCAaCUCa -3'
miRNA:   3'- caCA-ACCGCaGCUaGCGGCGGU-GAGa -5'
16035 5' -56.7 NC_004065.1 + 224566 0.66 0.925057
Target:  5'- cGUGUaGGCGUucacguaguacgucCGAUCGCCGUCGg--- -3'
miRNA:   3'- -CACAaCCGCA--------------GCUAGCGGCGGUgaga -5'
16035 5' -56.7 NC_004065.1 + 32735 0.67 0.921332
Target:  5'- uUGgcGGCGUCGcgCgagaaGCCGCCcaugcGCUCg -3'
miRNA:   3'- cACaaCCGCAGCuaG-----CGGCGG-----UGAGa -5'
16035 5' -56.7 NC_004065.1 + 45162 0.67 0.915822
Target:  5'- ----cGGCGUCc--CGCCGCcCGCUCg -3'
miRNA:   3'- cacaaCCGCAGcuaGCGGCG-GUGAGa -5'
16035 5' -56.7 NC_004065.1 + 153615 0.67 0.915822
Target:  5'- -gGUcGGC-UCGggCGgCGCCACUCg -3'
miRNA:   3'- caCAaCCGcAGCuaGCgGCGGUGAGa -5'
16035 5' -56.7 NC_004065.1 + 196288 0.67 0.910087
Target:  5'- -cGUUGGCGuaaUCGAccUCGCUG-CGCUCc -3'
miRNA:   3'- caCAACCGC---AGCU--AGCGGCgGUGAGa -5'
16035 5' -56.7 NC_004065.1 + 173487 0.67 0.891558
Target:  5'- -----aGCGccugCGGugUCGCCGCCACUCUg -3'
miRNA:   3'- cacaacCGCa---GCU--AGCGGCGGUGAGA- -5'
16035 5' -56.7 NC_004065.1 + 160038 0.67 0.891558
Target:  5'- -gGUUGGCGUUGAaggUCGCgauCGCgGCUUUc -3'
miRNA:   3'- caCAACCGCAGCU---AGCG---GCGgUGAGA- -5'
16035 5' -56.7 NC_004065.1 + 41261 0.68 0.884948
Target:  5'- cGUGUgGGCGgucgCGAUCGCCcuggugggcuucGCCGC-Cg -3'
miRNA:   3'- -CACAaCCGCa---GCUAGCGG------------CGGUGaGa -5'
16035 5' -56.7 NC_004065.1 + 212145 0.68 0.884948
Target:  5'- ----gGGCGUCcGUcCGCCGCUACUUUu -3'
miRNA:   3'- cacaaCCGCAGcUA-GCGGCGGUGAGA- -5'
16035 5' -56.7 NC_004065.1 + 146755 0.68 0.878129
Target:  5'- aUGUgGGCGUCGGcggCGuCUGCCGCaUCUc -3'
miRNA:   3'- cACAaCCGCAGCUa--GC-GGCGGUG-AGA- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.