Results 1 - 20 of 42 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
16035 | 5' | -56.7 | NC_004065.1 | + | 71770 | 1.08 | 0.004343 |
Target: 5'- cGUGUUGGCGUCGAUCGCCGCCACUCUg -3' miRNA: 3'- -CACAACCGCAGCUAGCGGCGGUGAGA- -5' |
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16035 | 5' | -56.7 | NC_004065.1 | + | 56567 | 0.82 | 0.22084 |
Target: 5'- gGUGcUGGCGUCGAgCGCCGCCAC-Cg -3' miRNA: 3'- -CACaACCGCAGCUaGCGGCGGUGaGa -5' |
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16035 | 5' | -56.7 | NC_004065.1 | + | 101851 | 0.76 | 0.4646 |
Target: 5'- -cGggGGCGUCGGgggcgcuaUCGCCGCCGCa-- -3' miRNA: 3'- caCaaCCGCAGCU--------AGCGGCGGUGaga -5' |
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16035 | 5' | -56.7 | NC_004065.1 | + | 161436 | 0.74 | 0.558829 |
Target: 5'- cGUGUcGGCGcUCugGAUCGCCGCCGC-Cg -3' miRNA: 3'- -CACAaCCGC-AG--CUAGCGGCGGUGaGa -5' |
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16035 | 5' | -56.7 | NC_004065.1 | + | 104162 | 0.71 | 0.697021 |
Target: 5'- -cGgcGGUGUCGGUCGCCGCU--UCg -3' miRNA: 3'- caCaaCCGCAGCUAGCGGCGGugAGa -5' |
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16035 | 5' | -56.7 | NC_004065.1 | + | 186399 | 0.71 | 0.697021 |
Target: 5'- -cGUUGGUGguUCGugucuggaacCGCCGCCGCUCUc -3' miRNA: 3'- caCAACCGC--AGCua--------GCGGCGGUGAGA- -5' |
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16035 | 5' | -56.7 | NC_004065.1 | + | 101611 | 0.71 | 0.70676 |
Target: 5'- gGUGgcGGCGcCGccgcCGCUGCCGCUCg -3' miRNA: 3'- -CACaaCCGCaGCua--GCGGCGGUGAGa -5' |
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16035 | 5' | -56.7 | NC_004065.1 | + | 137861 | 0.71 | 0.735584 |
Target: 5'- -----cGCGUCGAUCGCCGCCGa--- -3' miRNA: 3'- cacaacCGCAGCUAGCGGCGGUgaga -5' |
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16035 | 5' | -56.7 | NC_004065.1 | + | 194460 | 0.7 | 0.763647 |
Target: 5'- -gGUUGGgcaCGgCGG-CGCCGCCGCUCa -3' miRNA: 3'- caCAACC---GCaGCUaGCGGCGGUGAGa -5' |
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16035 | 5' | -56.7 | NC_004065.1 | + | 229665 | 0.7 | 0.763647 |
Target: 5'- aGUGgcaggugGGCGUCGGggCGCgCGuCCGCUCg -3' miRNA: 3'- -CACaa-----CCGCAGCUa-GCG-GC-GGUGAGa -5' |
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16035 | 5' | -56.7 | NC_004065.1 | + | 43911 | 0.7 | 0.781821 |
Target: 5'- -aGUc-GCGUCGAUgCGCCGCCAC-Ca -3' miRNA: 3'- caCAacCGCAGCUA-GCGGCGGUGaGa -5' |
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16035 | 5' | -56.7 | NC_004065.1 | + | 133489 | 0.7 | 0.781821 |
Target: 5'- aGUGcUGGCGUUGAUaCGuCCGCUACg-- -3' miRNA: 3'- -CACaACCGCAGCUA-GC-GGCGGUGaga -5' |
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16035 | 5' | -56.7 | NC_004065.1 | + | 66768 | 0.7 | 0.790722 |
Target: 5'- -aGgaGGCGcCGG-CGCCGCCGCUg- -3' miRNA: 3'- caCaaCCGCaGCUaGCGGCGGUGAga -5' |
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16035 | 5' | -56.7 | NC_004065.1 | + | 126175 | 0.7 | 0.799489 |
Target: 5'- ---gUGGUGcgCGAUCGCCGUCACg-- -3' miRNA: 3'- cacaACCGCa-GCUAGCGGCGGUGaga -5' |
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16035 | 5' | -56.7 | NC_004065.1 | + | 55425 | 0.7 | 0.799489 |
Target: 5'- cGUGguggUGGCGUgCuuccuagcgggGGUCGCCGCCGCg-- -3' miRNA: 3'- -CACa---ACCGCA-G-----------CUAGCGGCGGUGaga -5' |
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16035 | 5' | -56.7 | NC_004065.1 | + | 145462 | 0.69 | 0.808113 |
Target: 5'- ---aUGGCGUCGGggGCUGCCGgUCc -3' miRNA: 3'- cacaACCGCAGCUagCGGCGGUgAGa -5' |
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16035 | 5' | -56.7 | NC_004065.1 | + | 26394 | 0.69 | 0.824903 |
Target: 5'- uGUGUUGGCGagaGAguugCGCuCGCCACg-- -3' miRNA: 3'- -CACAACCGCag-CUa---GCG-GCGGUGaga -5' |
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16035 | 5' | -56.7 | NC_004065.1 | + | 118112 | 0.69 | 0.824903 |
Target: 5'- ---aUGGCGUCucUCGUCGCCGCg-- -3' miRNA: 3'- cacaACCGCAGcuAGCGGCGGUGaga -5' |
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16035 | 5' | -56.7 | NC_004065.1 | + | 3073 | 0.69 | 0.833054 |
Target: 5'- ----cGGCaGUCuGAUCGUCaGCCGCUCUg -3' miRNA: 3'- cacaaCCG-CAG-CUAGCGG-CGGUGAGA- -5' |
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16035 | 5' | -56.7 | NC_004065.1 | + | 52503 | 0.69 | 0.838658 |
Target: 5'- cUGUUGGCGcgCGGUgGCgguggugcagagagUGCCGCUCa -3' miRNA: 3'- cACAACCGCa-GCUAgCG--------------GCGGUGAGa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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