miRNA display CGI


Results 1 - 20 of 42 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16035 5' -56.7 NC_004065.1 + 3073 0.69 0.833054
Target:  5'- ----cGGCaGUCuGAUCGUCaGCCGCUCUg -3'
miRNA:   3'- cacaaCCG-CAG-CUAGCGG-CGGUGAGA- -5'
16035 5' -56.7 NC_004065.1 + 16526 0.69 0.841034
Target:  5'- uGUGUcaacuuucgUGGCGUCGAcggUCGCggCGaCCGCUCc -3'
miRNA:   3'- -CACA---------ACCGCAGCU---AGCG--GC-GGUGAGa -5'
16035 5' -56.7 NC_004065.1 + 26394 0.69 0.824903
Target:  5'- uGUGUUGGCGagaGAguugCGCuCGCCACg-- -3'
miRNA:   3'- -CACAACCGCag-CUa---GCG-GCGGUGaga -5'
16035 5' -56.7 NC_004065.1 + 32735 0.67 0.921332
Target:  5'- uUGgcGGCGUCGcgCgagaaGCCGCCcaugcGCUCg -3'
miRNA:   3'- cACaaCCGCAGCuaG-----CGGCGG-----UGAGa -5'
16035 5' -56.7 NC_004065.1 + 32956 0.66 0.945518
Target:  5'- aUGcgGGCGUCGA-CGUCGCgGCg-- -3'
miRNA:   3'- cACaaCCGCAGCUaGCGGCGgUGaga -5'
16035 5' -56.7 NC_004065.1 + 35955 0.66 0.941129
Target:  5'- ----aGGuCGUCGGacucgCGCCGCUGCUCc -3'
miRNA:   3'- cacaaCC-GCAGCUa----GCGGCGGUGAGa -5'
16035 5' -56.7 NC_004065.1 + 41261 0.68 0.884948
Target:  5'- cGUGUgGGCGgucgCGAUCGCCcuggugggcuucGCCGC-Cg -3'
miRNA:   3'- -CACAaCCGCa---GCUAGCGG------------CGGUGaGa -5'
16035 5' -56.7 NC_004065.1 + 43911 0.7 0.781821
Target:  5'- -aGUc-GCGUCGAUgCGCCGCCAC-Ca -3'
miRNA:   3'- caCAacCGCAGCUA-GCGGCGGUGaGa -5'
16035 5' -56.7 NC_004065.1 + 45162 0.67 0.915822
Target:  5'- ----cGGCGUCc--CGCCGCcCGCUCg -3'
miRNA:   3'- cacaaCCGCAGcuaGCGGCG-GUGAGa -5'
16035 5' -56.7 NC_004065.1 + 52503 0.69 0.838658
Target:  5'- cUGUUGGCGcgCGGUgGCgguggugcagagagUGCCGCUCa -3'
miRNA:   3'- cACAACCGCa-GCUAgCG--------------GCGGUGAGa -5'
16035 5' -56.7 NC_004065.1 + 55425 0.7 0.799489
Target:  5'- cGUGguggUGGCGUgCuuccuagcgggGGUCGCCGCCGCg-- -3'
miRNA:   3'- -CACa---ACCGCA-G-----------CUAGCGGCGGUGaga -5'
16035 5' -56.7 NC_004065.1 + 56567 0.82 0.22084
Target:  5'- gGUGcUGGCGUCGAgCGCCGCCAC-Cg -3'
miRNA:   3'- -CACaACCGCAGCUaGCGGCGGUGaGa -5'
16035 5' -56.7 NC_004065.1 + 62429 0.66 0.945518
Target:  5'- ---gUGGCGUuagcgUGAUUGuuGUCACUCUu -3'
miRNA:   3'- cacaACCGCA-----GCUAGCggCGGUGAGA- -5'
16035 5' -56.7 NC_004065.1 + 66768 0.7 0.790722
Target:  5'- -aGgaGGCGcCGG-CGCCGCCGCUg- -3'
miRNA:   3'- caCaaCCGCaGCUaGCGGCGGUGAga -5'
16035 5' -56.7 NC_004065.1 + 71770 1.08 0.004343
Target:  5'- cGUGUUGGCGUCGAUCGCCGCCACUCUg -3'
miRNA:   3'- -CACAACCGCAGCUAGCGGCGGUGAGA- -5'
16035 5' -56.7 NC_004065.1 + 98144 0.66 0.941129
Target:  5'- -gGUcUGGCGgUGAuagUCGCCGCCGC-Ca -3'
miRNA:   3'- caCA-ACCGCaGCU---AGCGGCGGUGaGa -5'
16035 5' -56.7 NC_004065.1 + 98848 0.66 0.941129
Target:  5'- aUGUcagGGgGUCGGUCauauccagaCGCCGCUCUa -3'
miRNA:   3'- cACAa--CCgCAGCUAGcg-------GCGGUGAGA- -5'
16035 5' -56.7 NC_004065.1 + 101611 0.71 0.70676
Target:  5'- gGUGgcGGCGcCGccgcCGCUGCCGCUCg -3'
miRNA:   3'- -CACaaCCGCaGCua--GCGGCGGUGAGa -5'
16035 5' -56.7 NC_004065.1 + 101851 0.76 0.4646
Target:  5'- -cGggGGCGUCGGgggcgcuaUCGCCGCCGCa-- -3'
miRNA:   3'- caCaaCCGCAGCU--------AGCGGCGGUGaga -5'
16035 5' -56.7 NC_004065.1 + 104162 0.71 0.697021
Target:  5'- -cGgcGGUGUCGGUCGCCGCU--UCg -3'
miRNA:   3'- caCaaCCGCAGCUAGCGGCGGugAGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.