miRNA display CGI


Results 1 - 20 of 42 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16035 5' -56.7 NC_004065.1 + 98144 0.66 0.941129
Target:  5'- -gGUcUGGCGgUGAuagUCGCCGCCGC-Ca -3'
miRNA:   3'- caCA-ACCGCaGCU---AGCGGCGGUGaGa -5'
16035 5' -56.7 NC_004065.1 + 3073 0.69 0.833054
Target:  5'- ----cGGCaGUCuGAUCGUCaGCCGCUCUg -3'
miRNA:   3'- cacaaCCG-CAG-CUAGCGG-CGGUGAGA- -5'
16035 5' -56.7 NC_004065.1 + 142299 0.68 0.863874
Target:  5'- -gGUUGGCuacuaauuucuuGUCGAUCGUCGaCCGCg-- -3'
miRNA:   3'- caCAACCG------------CAGCUAGCGGC-GGUGaga -5'
16035 5' -56.7 NC_004065.1 + 146755 0.68 0.878129
Target:  5'- aUGUgGGCGUCGGcggCGuCUGCCGCaUCUc -3'
miRNA:   3'- cACAaCCGCAGCUa--GC-GGCGGUG-AGA- -5'
16035 5' -56.7 NC_004065.1 + 196288 0.67 0.910087
Target:  5'- -cGUUGGCGuaaUCGAccUCGCUG-CGCUCc -3'
miRNA:   3'- caCAACCGC---AGCU--AGCGGCgGUGAGa -5'
16035 5' -56.7 NC_004065.1 + 32735 0.67 0.921332
Target:  5'- uUGgcGGCGUCGcgCgagaaGCCGCCcaugcGCUCg -3'
miRNA:   3'- cACaaCCGCAGCuaG-----CGGCGG-----UGAGa -5'
16035 5' -56.7 NC_004065.1 + 224566 0.66 0.925057
Target:  5'- cGUGUaGGCGUucacguaguacgucCGAUCGCCGUCGg--- -3'
miRNA:   3'- -CACAaCCGCA--------------GCUAGCGGCGGUgaga -5'
16035 5' -56.7 NC_004065.1 + 195843 0.66 0.926619
Target:  5'- -cGUcUGGCGcCGG-CGCCGUCAaCUCa -3'
miRNA:   3'- caCA-ACCGCaGCUaGCGGCGGU-GAGa -5'
16035 5' -56.7 NC_004065.1 + 35955 0.66 0.941129
Target:  5'- ----aGGuCGUCGGacucgCGCCGCUGCUCc -3'
miRNA:   3'- cacaaCC-GCAGCUa----GCGGCGGUGAGa -5'
16035 5' -56.7 NC_004065.1 + 118112 0.69 0.824903
Target:  5'- ---aUGGCGUCucUCGUCGCCGCg-- -3'
miRNA:   3'- cacaACCGCAGcuAGCGGCGGUGaga -5'
16035 5' -56.7 NC_004065.1 + 145462 0.69 0.808113
Target:  5'- ---aUGGCGUCGGggGCUGCCGgUCc -3'
miRNA:   3'- cacaACCGCAGCUagCGGCGGUgAGa -5'
16035 5' -56.7 NC_004065.1 + 126175 0.7 0.799489
Target:  5'- ---gUGGUGcgCGAUCGCCGUCACg-- -3'
miRNA:   3'- cacaACCGCa-GCUAGCGGCGGUGaga -5'
16035 5' -56.7 NC_004065.1 + 101851 0.76 0.4646
Target:  5'- -cGggGGCGUCGGgggcgcuaUCGCCGCCGCa-- -3'
miRNA:   3'- caCaaCCGCAGCU--------AGCGGCGGUGaga -5'
16035 5' -56.7 NC_004065.1 + 104162 0.71 0.697021
Target:  5'- -cGgcGGUGUCGGUCGCCGCU--UCg -3'
miRNA:   3'- caCaaCCGCAGCUAGCGGCGGugAGa -5'
16035 5' -56.7 NC_004065.1 + 137861 0.71 0.735584
Target:  5'- -----cGCGUCGAUCGCCGCCGa--- -3'
miRNA:   3'- cacaacCGCAGCUAGCGGCGGUgaga -5'
16035 5' -56.7 NC_004065.1 + 194460 0.7 0.763647
Target:  5'- -gGUUGGgcaCGgCGG-CGCCGCCGCUCa -3'
miRNA:   3'- caCAACC---GCaGCUaGCGGCGGUGAGa -5'
16035 5' -56.7 NC_004065.1 + 229665 0.7 0.763647
Target:  5'- aGUGgcaggugGGCGUCGGggCGCgCGuCCGCUCg -3'
miRNA:   3'- -CACaa-----CCGCAGCUa-GCG-GC-GGUGAGa -5'
16035 5' -56.7 NC_004065.1 + 43911 0.7 0.781821
Target:  5'- -aGUc-GCGUCGAUgCGCCGCCAC-Ca -3'
miRNA:   3'- caCAacCGCAGCUA-GCGGCGGUGaGa -5'
16035 5' -56.7 NC_004065.1 + 133489 0.7 0.781821
Target:  5'- aGUGcUGGCGUUGAUaCGuCCGCUACg-- -3'
miRNA:   3'- -CACaACCGCAGCUA-GC-GGCGGUGaga -5'
16035 5' -56.7 NC_004065.1 + 66768 0.7 0.790722
Target:  5'- -aGgaGGCGcCGG-CGCCGCCGCUg- -3'
miRNA:   3'- caCaaCCGCaGCUaGCGGCGGUGAga -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.