miRNA display CGI


Results 1 - 20 of 24 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1604 3' -56.7 NC_001347.2 + 173518 0.66 0.955952
Target:  5'- gUCGGgaACAGC-GGCaaGUCGCGUGGcGg -3'
miRNA:   3'- -GGCC--UGUCGuCCGcgCAGUGCAUCuC- -5'
1604 3' -56.7 NC_001347.2 + 151216 0.66 0.955952
Target:  5'- -aGGAgAGCA-GCGCGUUACcggAGGGg -3'
miRNA:   3'- ggCCUgUCGUcCGCGCAGUGca-UCUC- -5'
1604 3' -56.7 NC_001347.2 + 89031 0.66 0.955952
Target:  5'- aCCGGauuGCAGCugucGGGCGCGUUGCa----- -3'
miRNA:   3'- -GGCC---UGUCG----UCCGCGCAGUGcaucuc -5'
1604 3' -56.7 NC_001347.2 + 207115 0.66 0.952177
Target:  5'- gCGGACAGUuccucgucGGCGC-UUACGgAGGGg -3'
miRNA:   3'- gGCCUGUCGu-------CCGCGcAGUGCaUCUC- -5'
1604 3' -56.7 NC_001347.2 + 182207 0.66 0.946952
Target:  5'- gCGGGUGGCGGGCuGCGUCGCcuucggugacgucgGUGGuGg -3'
miRNA:   3'- gGCCUGUCGUCCG-CGCAGUG--------------CAUCuC- -5'
1604 3' -56.7 NC_001347.2 + 73561 0.66 0.939572
Target:  5'- cCCGGcgACGGaUGGGCGCG-CACGcGGAc -3'
miRNA:   3'- -GGCC--UGUC-GUCCGCGCaGUGCaUCUc -5'
1604 3' -56.7 NC_001347.2 + 37998 0.67 0.930082
Target:  5'- cUCGGGCAGCAGccgccGCGCGgccucgGCGgcGGGc -3'
miRNA:   3'- -GGCCUGUCGUC-----CGCGCag----UGCauCUC- -5'
1604 3' -56.7 NC_001347.2 + 27466 0.67 0.925007
Target:  5'- gUGGAUAGCuugcaccGGCGCuGUCAUGguUGGGGa -3'
miRNA:   3'- gGCCUGUCGu------CCGCG-CAGUGC--AUCUC- -5'
1604 3' -56.7 NC_001347.2 + 145648 0.67 0.914198
Target:  5'- cCCGGAgGGUccGCGCGaCACGcaAGAGa -3'
miRNA:   3'- -GGCCUgUCGucCGCGCaGUGCa-UCUC- -5'
1604 3' -56.7 NC_001347.2 + 92260 0.68 0.901909
Target:  5'- gCCGuGGCcGCcgccaugAGGCGCGUCAUGgaAGGGa -3'
miRNA:   3'- -GGC-CUGuCG-------UCCGCGCAGUGCa-UCUC- -5'
1604 3' -56.7 NC_001347.2 + 190739 0.68 0.889976
Target:  5'- gCGGACAGUuGaGCGCGUCGCcgcuaaaaaAGAGu -3'
miRNA:   3'- gGCCUGUCGuC-CGCGCAGUGca-------UCUC- -5'
1604 3' -56.7 NC_001347.2 + 185473 0.68 0.889327
Target:  5'- gCCGGACGGCGuuguGGCGCGcaggggcUCcgACGUGGc- -3'
miRNA:   3'- -GGCCUGUCGU----CCGCGC-------AG--UGCAUCuc -5'
1604 3' -56.7 NC_001347.2 + 2514 0.68 0.88605
Target:  5'- aCGGGCAGUuGGCuuuuuugcuacguccGgGUCGCGgcGAGg -3'
miRNA:   3'- gGCCUGUCGuCCG---------------CgCAGUGCauCUC- -5'
1604 3' -56.7 NC_001347.2 + 199637 0.69 0.862423
Target:  5'- cUCGGGCAGCgagggcacacuAGGCG-GUCGCG-AGAc -3'
miRNA:   3'- -GGCCUGUCG-----------UCCGCgCAGUGCaUCUc -5'
1604 3' -56.7 NC_001347.2 + 215831 0.69 0.847481
Target:  5'- -gGGACGGUguacGGGUGC-UCACGcUGGAGg -3'
miRNA:   3'- ggCCUGUCG----UCCGCGcAGUGC-AUCUC- -5'
1604 3' -56.7 NC_001347.2 + 174216 0.69 0.847481
Target:  5'- gCCGGACGGCA---GCGUCAC--AGAGg -3'
miRNA:   3'- -GGCCUGUCGUccgCGCAGUGcaUCUC- -5'
1604 3' -56.7 NC_001347.2 + 8822 0.7 0.806244
Target:  5'- cCCGGACcGUGGGCGCGacgaaacccaccgUCACGguccGAGc -3'
miRNA:   3'- -GGCCUGuCGUCCGCGC-------------AGUGCau--CUC- -5'
1604 3' -56.7 NC_001347.2 + 85507 0.71 0.772115
Target:  5'- uUCGGGCggcuugAGCGGGCGCG-CGCGcuuGAGc -3'
miRNA:   3'- -GGCCUG------UCGUCCGCGCaGUGCau-CUC- -5'
1604 3' -56.7 NC_001347.2 + 108664 0.71 0.763064
Target:  5'- gUCGGGCaagcagauguGGCAGGCGCGUCucACGgucucgGGAc -3'
miRNA:   3'- -GGCCUG----------UCGUCCGCGCAG--UGCa-----UCUc -5'
1604 3' -56.7 NC_001347.2 + 14707 0.71 0.763064
Target:  5'- cCUGGACgaacuGGCAcguuacGGUGUGUCACGUucGGAGa -3'
miRNA:   3'- -GGCCUG-----UCGU------CCGCGCAGUGCA--UCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.