miRNA display CGI


Results 1 - 20 of 22 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1604 5' -56.8 NC_001347.2 + 189128 0.66 0.930816
Target:  5'- cCCUCggagGCcgucgACUCcacGCGCCGCGgUGa -3'
miRNA:   3'- aGGAGaaa-CG-----UGAGu--CGCGGCGCgAC- -5'
1604 5' -56.8 NC_001347.2 + 1132 0.66 0.924078
Target:  5'- gCCUg-UUGCugUCucagauuccgguggAGCGCCagGCGCUGa -3'
miRNA:   3'- aGGAgaAACGugAG--------------UCGCGG--CGCGAC- -5'
1604 5' -56.8 NC_001347.2 + 163499 0.66 0.920289
Target:  5'- uUCCUCUUcguagagGCgGCUUAGCGCgaguUGCGCg- -3'
miRNA:   3'- -AGGAGAAa------CG-UGAGUCGCG----GCGCGac -5'
1604 5' -56.8 NC_001347.2 + 101411 0.66 0.911209
Target:  5'- aUCCUCaacguggaagccaUGCACaCGGUGCUGCGCg- -3'
miRNA:   3'- -AGGAGaa-----------ACGUGaGUCGCGGCGCGac -5'
1604 5' -56.8 NC_001347.2 + 157015 0.66 0.908848
Target:  5'- cCCgcgcgCUUUGCgACUCuGgGCC-CGCUGg -3'
miRNA:   3'- aGGa----GAAACG-UGAGuCgCGGcGCGAC- -5'
1604 5' -56.8 NC_001347.2 + 79910 0.66 0.908848
Target:  5'- cCCaaUUUGCcCUCAccccccaagcuGcCGCCGCGCUGg -3'
miRNA:   3'- aGGagAAACGuGAGU-----------C-GCGGCGCGAC- -5'
1604 5' -56.8 NC_001347.2 + 118183 0.67 0.896504
Target:  5'- gUCCUC---GCGC-CAGCccccGCCGCGCa- -3'
miRNA:   3'- -AGGAGaaaCGUGaGUCG----CGGCGCGac -5'
1604 5' -56.8 NC_001347.2 + 93186 0.67 0.896504
Target:  5'- cUCCUgCgguuuggGCGCcgAGCGCuCGCGCUGg -3'
miRNA:   3'- -AGGA-Gaaa----CGUGagUCGCG-GCGCGAC- -5'
1604 5' -56.8 NC_001347.2 + 168304 0.68 0.861845
Target:  5'- cCUUCUUgccgcgGCGCUCGGuCGaCGCGUUGu -3'
miRNA:   3'- aGGAGAAa-----CGUGAGUC-GCgGCGCGAC- -5'
1604 5' -56.8 NC_001347.2 + 31793 0.68 0.861845
Target:  5'- aUCUCacucUGCAUUUGGUGCCGUGCa- -3'
miRNA:   3'- aGGAGaa--ACGUGAGUCGCGGCGCGac -5'
1604 5' -56.8 NC_001347.2 + 195827 0.68 0.861845
Target:  5'- aCCUC---GCugUCuGgGCCGCGCUu -3'
miRNA:   3'- aGGAGaaaCGugAGuCgCGGCGCGAc -5'
1604 5' -56.8 NC_001347.2 + 107787 0.68 0.838629
Target:  5'- -gCUCUcgGUGCUgGGCGCuuccauCGCGCUGg -3'
miRNA:   3'- agGAGAaaCGUGAgUCGCG------GCGCGAC- -5'
1604 5' -56.8 NC_001347.2 + 102894 0.69 0.822241
Target:  5'- --gUUUUUGCGCaCAGCuaCGCGCUGg -3'
miRNA:   3'- aggAGAAACGUGaGUCGcgGCGCGAC- -5'
1604 5' -56.8 NC_001347.2 + 208838 0.69 0.813795
Target:  5'- gUCCUCgaaGCGC-CAGCGCC-CGCc- -3'
miRNA:   3'- -AGGAGaaaCGUGaGUCGCGGcGCGac -5'
1604 5' -56.8 NC_001347.2 + 2475 0.69 0.813795
Target:  5'- aCC----UGCACcCGcGCGCCGCGCUGu -3'
miRNA:   3'- aGGagaaACGUGaGU-CGCGGCGCGAC- -5'
1604 5' -56.8 NC_001347.2 + 40559 0.69 0.796435
Target:  5'- gUCCUUgccugUGUcguUUCGGCGCUGCGCUu -3'
miRNA:   3'- -AGGAGaa---ACGu--GAGUCGCGGCGCGAc -5'
1604 5' -56.8 NC_001347.2 + 226793 0.69 0.787539
Target:  5'- aCCUCg--GCAUgcCGGCGCCGgGCg- -3'
miRNA:   3'- aGGAGaaaCGUGa-GUCGCGGCgCGac -5'
1604 5' -56.8 NC_001347.2 + 169121 0.71 0.702455
Target:  5'- gCCUCggccGCGC---GCGCCGCGCUGc -3'
miRNA:   3'- aGGAGaaa-CGUGaguCGCGGCGCGAC- -5'
1604 5' -56.8 NC_001347.2 + 69117 0.71 0.67276
Target:  5'- aCCUCUgUGCGgaCAGCGCCGC-Ca- -3'
miRNA:   3'- aGGAGAaACGUgaGUCGCGGCGcGac -5'
1604 5' -56.8 NC_001347.2 + 77208 0.72 0.632758
Target:  5'- aUCCUCgg-GCGCaaAGCGCuCGCGCg- -3'
miRNA:   3'- -AGGAGaaaCGUGagUCGCG-GCGCGac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.