Results 1 - 20 of 25 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16041 | 3' | -51.2 | NC_004065.1 | + | 7568 | 0.69 | 0.98792 |
Target: 5'- gUCUGCGUAUCgugCGuCGUcGGGuCCGGc -3' miRNA: 3'- -GGACGCAUAGaa-GC-GCAcUCUuGGCC- -5' |
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16041 | 3' | -51.2 | NC_004065.1 | + | 15720 | 0.67 | 0.995914 |
Target: 5'- cUCUGCGUAcUCcUCGuCGUGAuGuGCUGGa -3' miRNA: 3'- -GGACGCAU-AGaAGC-GCACU-CuUGGCC- -5' |
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16041 | 3' | -51.2 | NC_004065.1 | + | 35386 | 0.67 | 0.997451 |
Target: 5'- gCCgagGCGUggaccgucAUCggCGcCGUGGGAgaguACCGGg -3' miRNA: 3'- -GGa--CGCA--------UAGaaGC-GCACUCU----UGGCC- -5' |
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16041 | 3' | -51.2 | NC_004065.1 | + | 37276 | 0.68 | 0.99553 |
Target: 5'- aCCaGUGUAUCUUCGagaGaGAGAguggaucguuauacgGCCGGu -3' miRNA: 3'- -GGaCGCAUAGAAGCg--CaCUCU---------------UGGCC- -5' |
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16041 | 3' | -51.2 | NC_004065.1 | + | 53799 | 0.67 | 0.997451 |
Target: 5'- gUCUGCGcgGUC--CGCc-GAGAGCCGGu -3' miRNA: 3'- -GGACGCa-UAGaaGCGcaCUCUUGGCC- -5' |
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16041 | 3' | -51.2 | NC_004065.1 | + | 64873 | 0.66 | 0.998302 |
Target: 5'- uCCUGCGgaccgCggcgCGCGUcgGAGAagagcggcgccagucGCCGGg -3' miRNA: 3'- -GGACGCaua--Gaa--GCGCA--CUCU---------------UGGCC- -5' |
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16041 | 3' | -51.2 | NC_004065.1 | + | 65302 | 0.69 | 0.98792 |
Target: 5'- uCCUGCuccuUCccCGCGUGguGGGACCGGc -3' miRNA: 3'- -GGACGcau-AGaaGCGCAC--UCUUGGCC- -5' |
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16041 | 3' | -51.2 | NC_004065.1 | + | 75711 | 1.14 | 0.007991 |
Target: 5'- uCCUGCGUAUCUUCGCGUGAGAACCGGg -3' miRNA: 3'- -GGACGCAUAGAAGCGCACUCUUGGCC- -5' |
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16041 | 3' | -51.2 | NC_004065.1 | + | 75875 | 0.66 | 0.99928 |
Target: 5'- --cGCGUAgaugUCGCGcagGAGGGCCuGGu -3' miRNA: 3'- ggaCGCAUaga-AGCGCa--CUCUUGG-CC- -5' |
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16041 | 3' | -51.2 | NC_004065.1 | + | 79645 | 0.68 | 0.99173 |
Target: 5'- gCgUGCGUGUCggCGC-UGAuGAcCCGGg -3' miRNA: 3'- -GgACGCAUAGaaGCGcACU-CUuGGCC- -5' |
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16041 | 3' | -51.2 | NC_004065.1 | + | 100350 | 0.71 | 0.965143 |
Target: 5'- cCCUgGCGUAUag-CGCGgaaGAuGAGCCGGu -3' miRNA: 3'- -GGA-CGCAUAgaaGCGCa--CU-CUUGGCC- -5' |
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16041 | 3' | -51.2 | NC_004065.1 | + | 108479 | 0.67 | 0.996956 |
Target: 5'- cCCUGCGUc-CUgUGUGUGGGGaagauguACCGGc -3' miRNA: 3'- -GGACGCAuaGAaGCGCACUCU-------UGGCC- -5' |
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16041 | 3' | -51.2 | NC_004065.1 | + | 113928 | 0.67 | 0.997004 |
Target: 5'- --cGCGUGUCgacgaCGCGgcgcucGGGGGCUGGg -3' miRNA: 3'- ggaCGCAUAGaa---GCGCa-----CUCUUGGCC- -5' |
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16041 | 3' | -51.2 | NC_004065.1 | + | 123194 | 0.71 | 0.9583 |
Target: 5'- gCCUGCGUcgUgcccgugugUUGCGUGAGGGCUuccuGGa -3' miRNA: 3'- -GGACGCAuaGa--------AGCGCACUCUUGG----CC- -5' |
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16041 | 3' | -51.2 | NC_004065.1 | + | 129611 | 0.76 | 0.789192 |
Target: 5'- uUCUGCGcgGUCagCGCG-GAGAACUGGa -3' miRNA: 3'- -GGACGCa-UAGaaGCGCaCUCUUGGCC- -5' |
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16041 | 3' | -51.2 | NC_004065.1 | + | 136588 | 0.68 | 0.99369 |
Target: 5'- uCCUGCGguccggggAUC--CGgGUGGGGugCGGg -3' miRNA: 3'- -GGACGCa-------UAGaaGCgCACUCUugGCC- -5' |
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16041 | 3' | -51.2 | NC_004065.1 | + | 136751 | 0.67 | 0.995914 |
Target: 5'- --cGCGg--UUUCGCGgGGGAugCGGg -3' miRNA: 3'- ggaCGCauaGAAGCGCaCUCUugGCC- -5' |
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16041 | 3' | -51.2 | NC_004065.1 | + | 138116 | 0.66 | 0.998941 |
Target: 5'- gCUUGCGUgaggauugugacGUUUUCGuCGagGAGAacccGCCGGg -3' miRNA: 3'- -GGACGCA------------UAGAAGC-GCa-CUCU----UGGCC- -5' |
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16041 | 3' | -51.2 | NC_004065.1 | + | 149149 | 0.69 | 0.989316 |
Target: 5'- gCCUG---AUCUUCGuCG-GGGGGCCGGa -3' miRNA: 3'- -GGACgcaUAGAAGC-GCaCUCUUGGCC- -5' |
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16041 | 3' | -51.2 | NC_004065.1 | + | 165524 | 0.72 | 0.95059 |
Target: 5'- gUUGCGUGcUCcuugagCGCGUGGGGACgGGu -3' miRNA: 3'- gGACGCAU-AGaa----GCGCACUCUUGgCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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