miRNA display CGI


Results 1 - 20 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16041 5' -63.6 NC_004065.1 + 151364 0.66 0.70455
Target:  5'- cCGCGGcGCcgGCCgCuGCGCUGGCggCCGa -3'
miRNA:   3'- -GCGUC-CGa-CGGgGuCGCGACUG--GGCc -5'
16041 5' -63.6 NC_004065.1 + 167414 0.66 0.70455
Target:  5'- cCGCGGcuGCUGCCgCCGGCGggGGCggCGGc -3'
miRNA:   3'- -GCGUC--CGACGG-GGUCGCgaCUGg-GCC- -5'
16041 5' -63.6 NC_004065.1 + 200796 0.66 0.70455
Target:  5'- gGCGGGCgacggcGUCUCGGCGCgggGAUCggaCGGg -3'
miRNA:   3'- gCGUCCGa-----CGGGGUCGCGa--CUGG---GCC- -5'
16041 5' -63.6 NC_004065.1 + 80132 0.66 0.70455
Target:  5'- uGCAGGUcGUCCCuggcgcggcagaGGCgGCUGACgaCGGg -3'
miRNA:   3'- gCGUCCGaCGGGG------------UCG-CGACUGg-GCC- -5'
16041 5' -63.6 NC_004065.1 + 122471 0.66 0.70455
Target:  5'- gGguGGC-GUCCCgguAGCGCacGACCCGc -3'
miRNA:   3'- gCguCCGaCGGGG---UCGCGa-CUGGGCc -5'
16041 5' -63.6 NC_004065.1 + 110573 0.66 0.70455
Target:  5'- gGCAGGCUGUugUCCAucaCGCUG-CCCa- -3'
miRNA:   3'- gCGUCCGACG--GGGUc--GCGACuGGGcc -5'
16041 5' -63.6 NC_004065.1 + 100777 0.66 0.695248
Target:  5'- gGCGGGCUcaGCUUCGcGCGgUGACgUGGa -3'
miRNA:   3'- gCGUCCGA--CGGGGU-CGCgACUGgGCC- -5'
16041 5' -63.6 NC_004065.1 + 80324 0.66 0.695248
Target:  5'- gCGCGGccGCgGCCCCccGGCGUUcGACCUGc -3'
miRNA:   3'- -GCGUC--CGaCGGGG--UCGCGA-CUGGGCc -5'
16041 5' -63.6 NC_004065.1 + 158032 0.66 0.689645
Target:  5'- aGCAGGCUcacCUCCAGgGCaUGcgucgccuccgggcuGCCCGGc -3'
miRNA:   3'- gCGUCCGAc--GGGGUCgCG-AC---------------UGGGCC- -5'
16041 5' -63.6 NC_004065.1 + 34943 0.66 0.6859
Target:  5'- uGgGGGuCUGCgCCGcGCGCUcGCCCGa -3'
miRNA:   3'- gCgUCC-GACGgGGU-CGCGAcUGGGCc -5'
16041 5' -63.6 NC_004065.1 + 192919 0.66 0.6859
Target:  5'- gCGgGGGCcgGCUCUuugauGGCGCUGACCgaucugcgcucuCGGg -3'
miRNA:   3'- -GCgUCCGa-CGGGG-----UCGCGACUGG------------GCC- -5'
16041 5' -63.6 NC_004065.1 + 51222 0.66 0.684963
Target:  5'- gGCGGuaUGgauCCCUgcuggauGGCGCUGGCCgCGGa -3'
miRNA:   3'- gCGUCcgAC---GGGG-------UCGCGACUGG-GCC- -5'
16041 5' -63.6 NC_004065.1 + 66625 0.66 0.679334
Target:  5'- cCGCGGGCUGCggCGcugcguggcggacGCGCUGACgcugauggagagccaCCGGg -3'
miRNA:   3'- -GCGUCCGACGggGU-------------CGCGACUG---------------GGCC- -5'
16041 5' -63.6 NC_004065.1 + 109859 0.66 0.676515
Target:  5'- gCGCAGGUgccgggcggUGCCaCCGGCGUc-GCCgCGGc -3'
miRNA:   3'- -GCGUCCG---------ACGG-GGUCGCGacUGG-GCC- -5'
16041 5' -63.6 NC_004065.1 + 83614 0.66 0.667098
Target:  5'- gCGCGGGC--CCCCggAGCGCagcauauugGGCCCGa -3'
miRNA:   3'- -GCGUCCGacGGGG--UCGCGa--------CUGGGCc -5'
16041 5' -63.6 NC_004065.1 + 42315 0.66 0.667098
Target:  5'- cCGCAGGCgcaGCCaCA-CGCUGGCCUu- -3'
miRNA:   3'- -GCGUCCGa--CGGgGUcGCGACUGGGcc -5'
16041 5' -63.6 NC_004065.1 + 141612 0.66 0.657657
Target:  5'- gGCGGGCUccGCUgCCGGCGgUGgcgGCUCGGc -3'
miRNA:   3'- gCGUCCGA--CGG-GGUCGCgAC---UGGGCC- -5'
16041 5' -63.6 NC_004065.1 + 103442 0.66 0.657657
Target:  5'- gGC-GGCaGCUCCAGCG--GACCCGa -3'
miRNA:   3'- gCGuCCGaCGGGGUCGCgaCUGGGCc -5'
16041 5' -63.6 NC_004065.1 + 168618 0.66 0.657657
Target:  5'- aGC-GGCUGCU--GGCGCUGguGCCgCGGg -3'
miRNA:   3'- gCGuCCGACGGggUCGCGAC--UGG-GCC- -5'
16041 5' -63.6 NC_004065.1 + 92083 0.66 0.657657
Target:  5'- cCGCGcGUUGCgCCAGCaGCUccgaGCCCGGc -3'
miRNA:   3'- -GCGUcCGACGgGGUCG-CGAc---UGGGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.