miRNA display CGI


Results 1 - 20 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16041 5' -63.6 NC_004065.1 + 75747 1.1 0.000855
Target:  5'- gCGCAGGCUGCCCCAGCGCUGACCCGGg -3'
miRNA:   3'- -GCGUCCGACGGGGUCGCGACUGGGCC- -5'
16041 5' -63.6 NC_004065.1 + 79640 0.75 0.234175
Target:  5'- uGCGGGCgugcGUgUCGGCGCugaUGACCCGGg -3'
miRNA:   3'- gCGUCCGa---CGgGGUCGCG---ACUGGGCC- -5'
16041 5' -63.6 NC_004065.1 + 104591 0.74 0.279525
Target:  5'- gGUGGGUaaccUGCCCgaGGCGCUGGCgCCGGc -3'
miRNA:   3'- gCGUCCG----ACGGGg-UCGCGACUG-GGCC- -5'
16041 5' -63.6 NC_004065.1 + 142212 0.73 0.317933
Target:  5'- aCGCGGuGCaGaCCUCGGUGCUGACCCu- -3'
miRNA:   3'- -GCGUC-CGaC-GGGGUCGCGACUGGGcc -5'
16041 5' -63.6 NC_004065.1 + 33059 0.72 0.345672
Target:  5'- uGCGGGCgccGCCUUgugucugggAGCGUgGACCCGGg -3'
miRNA:   3'- gCGUCCGa--CGGGG---------UCGCGaCUGGGCC- -5'
16041 5' -63.6 NC_004065.1 + 31635 0.71 0.375104
Target:  5'- uCGUAGGUgaagaccugGCCCaCGGCGUUGACgCCGa -3'
miRNA:   3'- -GCGUCCGa--------CGGG-GUCGCGACUG-GGCc -5'
16041 5' -63.6 NC_004065.1 + 81449 0.71 0.382722
Target:  5'- ---cGGCaccagGCCCCgcacGGgGCUGACCCGGa -3'
miRNA:   3'- gcguCCGa----CGGGG----UCgCGACUGGGCC- -5'
16041 5' -63.6 NC_004065.1 + 192692 0.71 0.411789
Target:  5'- gGUGGGCUGCUCCggaugacggaagcuGGUGCcGACCgGGg -3'
miRNA:   3'- gCGUCCGACGGGG--------------UCGCGaCUGGgCC- -5'
16041 5' -63.6 NC_004065.1 + 163005 0.71 0.414205
Target:  5'- uGCAcuGGCUGCCC--GCGCggGGCCCGu -3'
miRNA:   3'- gCGU--CCGACGGGguCGCGa-CUGGGCc -5'
16041 5' -63.6 NC_004065.1 + 126013 0.7 0.422321
Target:  5'- uCGCAGG-UGCUCCAGCGCcacGAgCCGc -3'
miRNA:   3'- -GCGUCCgACGGGGUCGCGa--CUgGGCc -5'
16041 5' -63.6 NC_004065.1 + 169451 0.7 0.422321
Target:  5'- -uCGGGC-GCCCCGccguGUGCgGACCCGGc -3'
miRNA:   3'- gcGUCCGaCGGGGU----CGCGaCUGGGCC- -5'
16041 5' -63.6 NC_004065.1 + 104310 0.7 0.430532
Target:  5'- gCGCAGGCgggcccGCCCCAGgGggaUGAUCgGGu -3'
miRNA:   3'- -GCGUCCGa-----CGGGGUCgCg--ACUGGgCC- -5'
16041 5' -63.6 NC_004065.1 + 202861 0.7 0.455714
Target:  5'- gGCAGGgcguuUUGCCgCGGCGUguguugcucgGACCCGGc -3'
miRNA:   3'- gCGUCC-----GACGGgGUCGCGa---------CUGGGCC- -5'
16041 5' -63.6 NC_004065.1 + 70676 0.7 0.455714
Target:  5'- cCGCaucAGGCUGCCCgAGgGCcugGACgUGGa -3'
miRNA:   3'- -GCG---UCCGACGGGgUCgCGa--CUGgGCC- -5'
16041 5' -63.6 NC_004065.1 + 200888 0.69 0.481669
Target:  5'- gGCucGGCUGCCCgucGCGCUGGgcgaCCGGc -3'
miRNA:   3'- gCGu-CCGACGGGgu-CGCGACUg---GGCC- -5'
16041 5' -63.6 NC_004065.1 + 65199 0.69 0.526428
Target:  5'- aCGCGGGCguucuaccGCCUCGG-GUUGACCCc- -3'
miRNA:   3'- -GCGUCCGa-------CGGGGUCgCGACUGGGcc -5'
16041 5' -63.6 NC_004065.1 + 168579 0.69 0.526428
Target:  5'- aGCGGGCgucucgGCCCgAGUGCUaGCUgCGGa -3'
miRNA:   3'- gCGUCCGa-----CGGGgUCGCGAcUGG-GCC- -5'
16041 5' -63.6 NC_004065.1 + 33733 0.69 0.526428
Target:  5'- aCGguGGCUcGgCCCAGCGCcuugcagGAgUCGGa -3'
miRNA:   3'- -GCguCCGA-CgGGGUCGCGa------CUgGGCC- -5'
16041 5' -63.6 NC_004065.1 + 35091 0.68 0.544773
Target:  5'- aCGgGGGCUGUCUCuGUGC-GAgCCGGu -3'
miRNA:   3'- -GCgUCCGACGGGGuCGCGaCUgGGCC- -5'
16041 5' -63.6 NC_004065.1 + 77405 0.68 0.554024
Target:  5'- aCGCuGGC-GCacaUGGCGgUGACCCGGg -3'
miRNA:   3'- -GCGuCCGaCGgg-GUCGCgACUGGGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.