miRNA display CGI


Results 21 - 40 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16041 5' -63.6 NC_004065.1 + 198225 0.66 0.648198
Target:  5'- gGCAGGCc-CCCCGGC-CUGuaGCCCa- -3'
miRNA:   3'- gCGUCCGacGGGGUCGcGAC--UGGGcc -5'
16041 5' -63.6 NC_004065.1 + 35227 0.67 0.638728
Target:  5'- gCGUucagGGGCUcgacgaucGCCCU-GCGC-GACCCGGu -3'
miRNA:   3'- -GCG----UCCGA--------CGGGGuCGCGaCUGGGCC- -5'
16041 5' -63.6 NC_004065.1 + 165895 0.67 0.638728
Target:  5'- aGCGGGaggagaaGCCCUuucuGCGCcGGCCCGa -3'
miRNA:   3'- gCGUCCga-----CGGGGu---CGCGaCUGGGCc -5'
16041 5' -63.6 NC_004065.1 + 23620 0.67 0.638728
Target:  5'- gGCAGGCggGUggaCgGGCgGCUGGCCuCGGg -3'
miRNA:   3'- gCGUCCGa-CGg--GgUCG-CGACUGG-GCC- -5'
16041 5' -63.6 NC_004065.1 + 118037 0.67 0.633044
Target:  5'- uCGUAGGCgGCCCCcucgAGCGCcuucaucgcggccggUGACuuGa -3'
miRNA:   3'- -GCGUCCGaCGGGG----UCGCG---------------ACUGggCc -5'
16041 5' -63.6 NC_004065.1 + 186237 0.67 0.629255
Target:  5'- aGCGauGCUGCCCCuGGC-CUGGCCCc- -3'
miRNA:   3'- gCGUc-CGACGGGG-UCGcGACUGGGcc -5'
16041 5' -63.6 NC_004065.1 + 119184 0.67 0.629255
Target:  5'- aCGCGGGCggcccgcGCCCC-GCaCUGguGCCUGGc -3'
miRNA:   3'- -GCGUCCGa------CGGGGuCGcGAC--UGGGCC- -5'
16041 5' -63.6 NC_004065.1 + 160684 0.67 0.622623
Target:  5'- gGCAGGUUGCCCuccgccagcugcuuCAGCGCguucuccagcauGCCCGu -3'
miRNA:   3'- gCGUCCGACGGG--------------GUCGCGac----------UGGGCc -5'
16041 5' -63.6 NC_004065.1 + 79796 0.67 0.600868
Target:  5'- aGC-GGCUGaUCCUGacgacGcCGCUGGCCCGGa -3'
miRNA:   3'- gCGuCCGAC-GGGGU-----C-GCGACUGGGCC- -5'
16041 5' -63.6 NC_004065.1 + 120573 0.67 0.600868
Target:  5'- aGCGGGCggGaCCuCCGGCGCcGGuCUCGGc -3'
miRNA:   3'- gCGUCCGa-C-GG-GGUCGCGaCU-GGGCC- -5'
16041 5' -63.6 NC_004065.1 + 37201 0.67 0.600868
Target:  5'- aGC-GGCUGCCUCaAGCGCaGcGCCCa- -3'
miRNA:   3'- gCGuCCGACGGGG-UCGCGaC-UGGGcc -5'
16041 5' -63.6 NC_004065.1 + 68337 0.67 0.591438
Target:  5'- uGCGGgaGCUGCUgCAGCaGCUG-CCCGu -3'
miRNA:   3'- gCGUC--CGACGGgGUCG-CGACuGGGCc -5'
16041 5' -63.6 NC_004065.1 + 67887 0.67 0.591438
Target:  5'- -uCAGGUUGCCCgAGCGuCUG-UCCGa -3'
miRNA:   3'- gcGUCCGACGGGgUCGC-GACuGGGCc -5'
16041 5' -63.6 NC_004065.1 + 185250 0.67 0.591438
Target:  5'- uGC-GGCccagGCCUCGGaCGaccCUGGCCCGGg -3'
miRNA:   3'- gCGuCCGa---CGGGGUC-GC---GACUGGGCC- -5'
16041 5' -63.6 NC_004065.1 + 82779 0.68 0.582033
Target:  5'- aGCAGGC-GUCCgguGGCGCcGACCCa- -3'
miRNA:   3'- gCGUCCGaCGGGg--UCGCGaCUGGGcc -5'
16041 5' -63.6 NC_004065.1 + 114819 0.68 0.582033
Target:  5'- gGCGGuaUGCCCCGuCGCggcGGCCaCGGc -3'
miRNA:   3'- gCGUCcgACGGGGUcGCGa--CUGG-GCC- -5'
16041 5' -63.6 NC_004065.1 + 6926 0.68 0.572659
Target:  5'- uGCGGGCacgGCCUCGGCGUccGCCguCGGa -3'
miRNA:   3'- gCGUCCGa--CGGGGUCGCGacUGG--GCC- -5'
16041 5' -63.6 NC_004065.1 + 96041 0.68 0.572659
Target:  5'- gCGUGGGCacggGCCCCGGCcgccgauauagGCUuGCCCGu -3'
miRNA:   3'- -GCGUCCGa---CGGGGUCG-----------CGAcUGGGCc -5'
16041 5' -63.6 NC_004065.1 + 77405 0.68 0.554024
Target:  5'- aCGCuGGC-GCacaUGGCGgUGACCCGGg -3'
miRNA:   3'- -GCGuCCGaCGgg-GUCGCgACUGGGCC- -5'
16041 5' -63.6 NC_004065.1 + 35091 0.68 0.544773
Target:  5'- aCGgGGGCUGUCUCuGUGC-GAgCCGGu -3'
miRNA:   3'- -GCgUCCGACGGGGuCGCGaCUgGGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.