miRNA display CGI


Results 1 - 20 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16041 5' -63.6 NC_004065.1 + 6926 0.68 0.572659
Target:  5'- uGCGGGCacgGCCUCGGCGUccGCCguCGGa -3'
miRNA:   3'- gCGUCCGa--CGGGGUCGCGacUGG--GCC- -5'
16041 5' -63.6 NC_004065.1 + 23620 0.67 0.638728
Target:  5'- gGCAGGCggGUggaCgGGCgGCUGGCCuCGGg -3'
miRNA:   3'- gCGUCCGa-CGg--GgUCG-CGACUGG-GCC- -5'
16041 5' -63.6 NC_004065.1 + 31635 0.71 0.375104
Target:  5'- uCGUAGGUgaagaccugGCCCaCGGCGUUGACgCCGa -3'
miRNA:   3'- -GCGUCCGa--------CGGG-GUCGCGACUG-GGCc -5'
16041 5' -63.6 NC_004065.1 + 33059 0.72 0.345672
Target:  5'- uGCGGGCgccGCCUUgugucugggAGCGUgGACCCGGg -3'
miRNA:   3'- gCGUCCGa--CGGGG---------UCGCGaCUGGGCC- -5'
16041 5' -63.6 NC_004065.1 + 33733 0.69 0.526428
Target:  5'- aCGguGGCUcGgCCCAGCGCcuugcagGAgUCGGa -3'
miRNA:   3'- -GCguCCGA-CgGGGUCGCGa------CUgGGCC- -5'
16041 5' -63.6 NC_004065.1 + 34943 0.66 0.6859
Target:  5'- uGgGGGuCUGCgCCGcGCGCUcGCCCGa -3'
miRNA:   3'- gCgUCC-GACGgGGU-CGCGAcUGGGCc -5'
16041 5' -63.6 NC_004065.1 + 35091 0.68 0.544773
Target:  5'- aCGgGGGCUGUCUCuGUGC-GAgCCGGu -3'
miRNA:   3'- -GCgUCCGACGGGGuCGCGaCUgGGCC- -5'
16041 5' -63.6 NC_004065.1 + 35227 0.67 0.638728
Target:  5'- gCGUucagGGGCUcgacgaucGCCCU-GCGC-GACCCGGu -3'
miRNA:   3'- -GCG----UCCGA--------CGGGGuCGCGaCUGGGCC- -5'
16041 5' -63.6 NC_004065.1 + 37201 0.67 0.600868
Target:  5'- aGC-GGCUGCCUCaAGCGCaGcGCCCa- -3'
miRNA:   3'- gCGuCCGACGGGG-UCGCGaC-UGGGcc -5'
16041 5' -63.6 NC_004065.1 + 42315 0.66 0.667098
Target:  5'- cCGCAGGCgcaGCCaCA-CGCUGGCCUu- -3'
miRNA:   3'- -GCGUCCGa--CGGgGUcGCGACUGGGcc -5'
16041 5' -63.6 NC_004065.1 + 51222 0.66 0.684963
Target:  5'- gGCGGuaUGgauCCCUgcuggauGGCGCUGGCCgCGGa -3'
miRNA:   3'- gCGUCcgAC---GGGG-------UCGCGACUGG-GCC- -5'
16041 5' -63.6 NC_004065.1 + 65199 0.69 0.526428
Target:  5'- aCGCGGGCguucuaccGCCUCGG-GUUGACCCc- -3'
miRNA:   3'- -GCGUCCGa-------CGGGGUCgCGACUGGGcc -5'
16041 5' -63.6 NC_004065.1 + 66625 0.66 0.679334
Target:  5'- cCGCGGGCUGCggCGcugcguggcggacGCGCUGACgcugauggagagccaCCGGg -3'
miRNA:   3'- -GCGUCCGACGggGU-------------CGCGACUG---------------GGCC- -5'
16041 5' -63.6 NC_004065.1 + 67887 0.67 0.591438
Target:  5'- -uCAGGUUGCCCgAGCGuCUG-UCCGa -3'
miRNA:   3'- gcGUCCGACGGGgUCGC-GACuGGGCc -5'
16041 5' -63.6 NC_004065.1 + 68337 0.67 0.591438
Target:  5'- uGCGGgaGCUGCUgCAGCaGCUG-CCCGu -3'
miRNA:   3'- gCGUC--CGACGGgGUCG-CGACuGGGCc -5'
16041 5' -63.6 NC_004065.1 + 70676 0.7 0.455714
Target:  5'- cCGCaucAGGCUGCCCgAGgGCcugGACgUGGa -3'
miRNA:   3'- -GCG---UCCGACGGGgUCgCGa--CUGgGCC- -5'
16041 5' -63.6 NC_004065.1 + 75747 1.1 0.000855
Target:  5'- gCGCAGGCUGCCCCAGCGCUGACCCGGg -3'
miRNA:   3'- -GCGUCCGACGGGGUCGCGACUGGGCC- -5'
16041 5' -63.6 NC_004065.1 + 77405 0.68 0.554024
Target:  5'- aCGCuGGC-GCacaUGGCGgUGACCCGGg -3'
miRNA:   3'- -GCGuCCGaCGgg-GUCGCgACUGGGCC- -5'
16041 5' -63.6 NC_004065.1 + 79640 0.75 0.234175
Target:  5'- uGCGGGCgugcGUgUCGGCGCugaUGACCCGGg -3'
miRNA:   3'- gCGUCCGa---CGgGGUCGCG---ACUGGGCC- -5'
16041 5' -63.6 NC_004065.1 + 79796 0.67 0.600868
Target:  5'- aGC-GGCUGaUCCUGacgacGcCGCUGGCCCGGa -3'
miRNA:   3'- gCGuCCGAC-GGGGU-----C-GCGACUGGGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.